Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2159 and GFF2160 are separated by 36 nucleotides GFF2160 and GFF2161 overlap by 4 nucleotides GFF2161 and GFF2162 are separated by 272 nucleotides
GFF2159 - Arylsulfatase, at 851,366 to 852,835
GFF2159
GFF2160 - Adaptive-response sensory-kinase SasA, at 852,872 to 854,311
GFF2160
GFF2161 - Transcriptional regulatory protein OmpR, at 854,308 to 855,027
GFF2161
GFF2162 - hypothetical protein, at 855,300 to 857,513
GFF2162
Position (kb) 852
853
854
855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.930 kb on + strand, within GFF2159 at 851.963 kb on + strand, within GFF2159 at 851.964 kb on - strand, within GFF2159 at 852.039 kb on - strand, within GFF2159 at 852.098 kb on + strand, within GFF2159 at 852.098 kb on + strand, within GFF2159 at 852.098 kb on + strand, within GFF2159 at 852.098 kb on + strand, within GFF2159 at 852.098 kb on + strand, within GFF2159 at 852.098 kb on + strand, within GFF2159 at 852.098 kb on + strand, within GFF2159 at 852.098 kb on + strand, within GFF2159 at 852.099 kb on - strand, within GFF2159 at 852.099 kb on - strand, within GFF2159 at 852.099 kb on - strand, within GFF2159 at 852.099 kb on - strand, within GFF2159 at 852.099 kb on - strand, within GFF2159 at 852.131 kb on + strand, within GFF2159 at 852.260 kb on + strand, within GFF2159 at 852.420 kb on + strand, within GFF2159 at 852.420 kb on + strand, within GFF2159 at 852.421 kb on - strand, within GFF2159 at 852.421 kb on - strand, within GFF2159 at 852.421 kb on - strand, within GFF2159 at 852.543 kb on - strand, within GFF2159 at 852.543 kb on - strand, within GFF2159 at 852.810 kb on - strand at 852.810 kb on - strand at 852.833 kb on + strand at 852.833 kb on + strand at 853.156 kb on - strand, within GFF2160 at 853.173 kb on - strand, within GFF2160 at 853.976 kb on + strand, within GFF2160 at 853.977 kb on - strand, within GFF2160 at 854.002 kb on + strand, within GFF2160 at 854.343 kb on - strand at 854.343 kb on - strand at 854.343 kb on - strand at 854.424 kb on + strand, within GFF2161 at 854.424 kb on + strand, within GFF2161 at 854.424 kb on + strand, within GFF2161 at 854.425 kb on - strand, within GFF2161 at 854.425 kb on - strand, within GFF2161 at 854.425 kb on - strand, within GFF2161 at 854.428 kb on + strand, within GFF2161 at 854.428 kb on + strand, within GFF2161 at 854.428 kb on + strand, within GFF2161 at 854.428 kb on + strand, within GFF2161 at 854.429 kb on - strand, within GFF2161 at 854.429 kb on - strand, within GFF2161 at 854.429 kb on - strand, within GFF2161 at 854.621 kb on + strand, within GFF2161 at 854.726 kb on + strand, within GFF2161 at 854.726 kb on + strand, within GFF2161 at 854.727 kb on - strand, within GFF2161 at 854.727 kb on - strand, within GFF2161 at 854.961 kb on - strand at 855.028 kb on - strand at 855.028 kb on - strand at 855.134 kb on + strand at 855.135 kb on - strand at 855.145 kb on - strand at 855.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 851,930 + GFF2159 0.38 +1.0 851,963 + GFF2159 0.41 -0.3 851,964 - GFF2159 0.41 -0.4 852,039 - GFF2159 0.46 -0.6 852,098 + GFF2159 0.50 +0.3 852,098 + GFF2159 0.50 +0.5 852,098 + GFF2159 0.50 +0.8 852,098 + GFF2159 0.50 +0.3 852,098 + GFF2159 0.50 +2.1 852,098 + GFF2159 0.50 +1.1 852,098 + GFF2159 0.50 +0.6 852,098 + GFF2159 0.50 -0.7 852,099 - GFF2159 0.50 +0.8 852,099 - GFF2159 0.50 +0.3 852,099 - GFF2159 0.50 +0.3 852,099 - GFF2159 0.50 -0.2 852,099 - GFF2159 0.50 +0.7 852,131 + GFF2159 0.52 -0.2 852,260 + GFF2159 0.61 -2.4 852,420 + GFF2159 0.72 -0.6 852,420 + GFF2159 0.72 +0.3 852,421 - GFF2159 0.72 +1.6 852,421 - GFF2159 0.72 +0.8 852,421 - GFF2159 0.72 +0.5 852,543 - GFF2159 0.80 +0.6 852,543 - GFF2159 0.80 -0.2 852,810 - +0.5 852,810 - -0.0 852,833 + -1.3 852,833 + -1.1 853,156 - GFF2160 0.20 -1.4 853,173 - GFF2160 0.21 -0.3 853,976 + GFF2160 0.77 -0.7 853,977 - GFF2160 0.77 -0.5 854,002 + GFF2160 0.78 -1.2 854,343 - -0.7 854,343 - +0.7 854,343 - -0.9 854,424 + GFF2161 0.16 -0.3 854,424 + GFF2161 0.16 -0.8 854,424 + GFF2161 0.16 -0.4 854,425 - GFF2161 0.16 -0.4 854,425 - GFF2161 0.16 -0.4 854,425 - GFF2161 0.16 +0.5 854,428 + GFF2161 0.17 -0.4 854,428 + GFF2161 0.17 +0.1 854,428 + GFF2161 0.17 -0.1 854,428 + GFF2161 0.17 -0.1 854,429 - GFF2161 0.17 -0.7 854,429 - GFF2161 0.17 -0.2 854,429 - GFF2161 0.17 -0.0 854,621 + GFF2161 0.43 -2.1 854,726 + GFF2161 0.58 +0.8 854,726 + GFF2161 0.58 +0.1 854,727 - GFF2161 0.58 -2.0 854,727 - GFF2161 0.58 -0.9 854,961 - +0.2 855,028 - +0.7 855,028 - +0.9 855,134 + -0.3 855,135 - -0.8 855,145 - -1.0 855,173 + -0.7
Or see this region's nucleotide sequence