Strain Fitness in Xanthobacter sp. DMC5 around GFF2139

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2138 and GFF2139 are separated by 325 nucleotidesGFF2139 and GFF2140 are separated by 67 nucleotides GFF2138 - hypothetical protein, at 826,475 to 827,191 GFF2138 GFF2139 - L-rhamnonate dehydratase, at 827,517 to 828,701 GFF2139 GFF2140 - Inner membrane transport protein RhmT, at 828,769 to 830,079 GFF2140 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1 2at 826.544 kb on + strandat 826.546 kb on + strandat 826.598 kb on + strand, within GFF2138at 826.623 kb on + strand, within GFF2138at 826.623 kb on + strand, within GFF2138at 826.623 kb on + strand, within GFF2138at 826.623 kb on + strand, within GFF2138at 826.623 kb on + strand, within GFF2138at 826.624 kb on - strand, within GFF2138at 826.624 kb on - strand, within GFF2138at 826.624 kb on - strand, within GFF2138at 826.664 kb on + strand, within GFF2138at 826.681 kb on - strand, within GFF2138at 826.692 kb on + strand, within GFF2138at 826.692 kb on + strand, within GFF2138at 826.693 kb on - strand, within GFF2138at 826.744 kb on + strand, within GFF2138at 826.744 kb on + strand, within GFF2138at 826.744 kb on + strand, within GFF2138at 826.759 kb on - strand, within GFF2138at 826.813 kb on + strand, within GFF2138at 826.906 kb on - strand, within GFF2138at 826.910 kb on - strand, within GFF2138at 826.910 kb on - strand, within GFF2138at 826.948 kb on + strand, within GFF2138at 826.949 kb on - strand, within GFF2138at 826.949 kb on - strand, within GFF2138at 826.949 kb on - strand, within GFF2138at 826.951 kb on + strand, within GFF2138at 826.951 kb on + strand, within GFF2138at 827.110 kb on + strand, within GFF2138at 827.126 kb on - strandat 827.186 kb on - strandat 827.231 kb on + strandat 827.232 kb on - strandat 827.232 kb on - strandat 827.279 kb on + strandat 827.398 kb on - strandat 827.398 kb on - strandat 827.462 kb on - strandat 827.527 kb on + strandat 827.527 kb on + strandat 827.527 kb on + strandat 827.605 kb on - strandat 827.705 kb on + strand, within GFF2139at 827.705 kb on + strand, within GFF2139at 827.706 kb on - strand, within GFF2139at 827.728 kb on + strand, within GFF2139at 827.729 kb on - strand, within GFF2139at 827.729 kb on - strand, within GFF2139at 827.729 kb on - strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.734 kb on + strand, within GFF2139at 827.735 kb on - strand, within GFF2139at 827.792 kb on - strand, within GFF2139at 827.950 kb on + strand, within GFF2139at 827.951 kb on - strand, within GFF2139at 827.960 kb on - strand, within GFF2139at 827.960 kb on - strand, within GFF2139at 827.960 kb on - strand, within GFF2139at 827.960 kb on - strand, within GFF2139at 828.035 kb on - strand, within GFF2139at 828.064 kb on + strand, within GFF2139at 828.064 kb on + strand, within GFF2139at 828.064 kb on + strand, within GFF2139at 828.065 kb on - strand, within GFF2139at 828.065 kb on - strand, within GFF2139at 828.226 kb on + strand, within GFF2139at 828.226 kb on + strand, within GFF2139at 828.227 kb on - strand, within GFF2139at 828.227 kb on - strand, within GFF2139at 828.227 kb on - strand, within GFF2139at 828.358 kb on + strand, within GFF2139at 828.358 kb on + strand, within GFF2139at 828.376 kb on + strand, within GFF2139at 828.525 kb on + strand, within GFF2139at 828.526 kb on - strand, within GFF2139at 828.572 kb on - strand, within GFF2139at 828.581 kb on - strand, within GFF2139at 828.622 kb on + strandat 828.622 kb on + strandat 828.623 kb on - strandat 828.640 kb on + strandat 828.641 kb on - strandat 828.641 kb on - strandat 828.667 kb on + strandat 828.668 kb on - strandat 828.866 kb on + strandat 828.866 kb on + strandat 828.866 kb on + strandat 828.866 kb on + strandat 828.866 kb on + strandat 828.866 kb on + strandat 828.866 kb on + strandat 828.866 kb on + strandat 828.866 kb on + strandat 828.867 kb on - strandat 828.867 kb on - strandat 828.996 kb on - strand, within GFF2140at 829.187 kb on + strand, within GFF2140at 829.187 kb on + strand, within GFF2140at 829.187 kb on + strand, within GFF2140at 829.187 kb on + strand, within GFF2140at 829.187 kb on + strand, within GFF2140at 829.187 kb on + strand, within GFF2140at 829.188 kb on - strand, within GFF2140at 829.286 kb on + strand, within GFF2140at 829.301 kb on + strand, within GFF2140at 829.301 kb on + strand, within GFF2140at 829.301 kb on + strand, within GFF2140at 829.325 kb on + strand, within GFF2140at 829.325 kb on + strand, within GFF2140at 829.326 kb on - strand, within GFF2140at 829.326 kb on - strand, within GFF2140at 829.349 kb on + strand, within GFF2140at 829.352 kb on - strand, within GFF2140at 829.487 kb on + strand, within GFF2140at 829.487 kb on + strand, within GFF2140at 829.493 kb on + strand, within GFF2140at 829.493 kb on + strand, within GFF2140at 829.493 kb on + strand, within GFF2140at 829.493 kb on + strand, within GFF2140at 829.493 kb on + strand, within GFF2140at 829.494 kb on - strand, within GFF2140at 829.494 kb on - strand, within GFF2140at 829.494 kb on - strand, within GFF2140at 829.538 kb on + strand, within GFF2140at 829.637 kb on + strand, within GFF2140at 829.638 kb on - strand, within GFF2140at 829.691 kb on + strand, within GFF2140at 829.692 kb on - strand, within GFF2140

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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826,544 + -0.6
826,546 + -0.3
826,598 + GFF2138 0.17 -0.5
826,623 + GFF2138 0.21 +0.2
826,623 + GFF2138 0.21 +0.0
826,623 + GFF2138 0.21 -2.2
826,623 + GFF2138 0.21 -0.4
826,623 + GFF2138 0.21 -1.8
826,624 - GFF2138 0.21 -2.4
826,624 - GFF2138 0.21 +0.5
826,624 - GFF2138 0.21 +0.6
826,664 + GFF2138 0.26 -0.5
826,681 - GFF2138 0.29 +0.3
826,692 + GFF2138 0.30 +0.0
826,692 + GFF2138 0.30 +0.6
826,693 - GFF2138 0.30 -0.5
826,744 + GFF2138 0.38 -0.2
826,744 + GFF2138 0.38 -0.7
826,744 + GFF2138 0.38 -1.0
826,759 - GFF2138 0.40 +1.1
826,813 + GFF2138 0.47 -0.8
826,906 - GFF2138 0.60 +0.6
826,910 - GFF2138 0.61 -0.5
826,910 - GFF2138 0.61 +0.1
826,948 + GFF2138 0.66 +0.7
826,949 - GFF2138 0.66 +0.9
826,949 - GFF2138 0.66 -0.5
826,949 - GFF2138 0.66 +1.8
826,951 + GFF2138 0.66 +0.4
826,951 + GFF2138 0.66 -0.2
827,110 + GFF2138 0.89 -0.8
827,126 - -0.7
827,186 - -0.3
827,231 + +0.3
827,232 - -0.1
827,232 - -0.4
827,279 + -1.1
827,398 - +0.2
827,398 - -0.4
827,462 - -1.2
827,527 + -0.7
827,527 + -0.2
827,527 + -0.5
827,605 - -1.0
827,705 + GFF2139 0.16 +0.1
827,705 + GFF2139 0.16 +1.2
827,706 - GFF2139 0.16 -0.4
827,728 + GFF2139 0.18 -0.0
827,729 - GFF2139 0.18 -1.1
827,729 - GFF2139 0.18 -0.3
827,729 - GFF2139 0.18 +0.3
827,734 + GFF2139 0.18 -1.5
827,734 + GFF2139 0.18 -0.2
827,734 + GFF2139 0.18 +0.2
827,734 + GFF2139 0.18 -0.3
827,734 + GFF2139 0.18 -0.4
827,734 + GFF2139 0.18 -0.2
827,734 + GFF2139 0.18 -0.7
827,734 + GFF2139 0.18 +0.3
827,734 + GFF2139 0.18 +1.1
827,734 + GFF2139 0.18 -0.8
827,735 - GFF2139 0.18 -0.7
827,792 - GFF2139 0.23 +1.1
827,950 + GFF2139 0.37 -0.4
827,951 - GFF2139 0.37 -0.4
827,960 - GFF2139 0.37 -0.5
827,960 - GFF2139 0.37 +0.5
827,960 - GFF2139 0.37 +0.3
827,960 - GFF2139 0.37 -0.0
828,035 - GFF2139 0.44 +0.0
828,064 + GFF2139 0.46 -0.6
828,064 + GFF2139 0.46 -0.3
828,064 + GFF2139 0.46 +0.2
828,065 - GFF2139 0.46 +0.7
828,065 - GFF2139 0.46 -0.1
828,226 + GFF2139 0.60 -0.2
828,226 + GFF2139 0.60 -0.4
828,227 - GFF2139 0.60 -0.1
828,227 - GFF2139 0.60 -0.0
828,227 - GFF2139 0.60 +1.1
828,358 + GFF2139 0.71 -0.3
828,358 + GFF2139 0.71 +0.4
828,376 + GFF2139 0.72 -1.2
828,525 + GFF2139 0.85 +0.2
828,526 - GFF2139 0.85 -0.1
828,572 - GFF2139 0.89 +0.2
828,581 - GFF2139 0.90 +0.2
828,622 + -0.2
828,622 + +1.7
828,623 - -1.1
828,640 + +0.6
828,641 - +0.3
828,641 - +0.3
828,667 + +0.1
828,668 - +0.1
828,866 + -2.4
828,866 + -0.8
828,866 + -0.7
828,866 + +0.8
828,866 + +0.8
828,866 + -0.8
828,866 + -0.3
828,866 + +0.0
828,866 + +0.5
828,867 - +0.0
828,867 - +0.3
828,996 - GFF2140 0.17 -0.1
829,187 + GFF2140 0.32 +0.0
829,187 + GFF2140 0.32 +0.5
829,187 + GFF2140 0.32 -0.3
829,187 + GFF2140 0.32 -0.7
829,187 + GFF2140 0.32 -0.1
829,187 + GFF2140 0.32 +0.1
829,188 - GFF2140 0.32 -0.4
829,286 + GFF2140 0.39 +0.5
829,301 + GFF2140 0.41 +0.7
829,301 + GFF2140 0.41 -0.7
829,301 + GFF2140 0.41 +0.2
829,325 + GFF2140 0.42 -0.2
829,325 + GFF2140 0.42 -0.6
829,326 - GFF2140 0.42 +0.3
829,326 - GFF2140 0.42 -0.5
829,349 + GFF2140 0.44 +1.1
829,352 - GFF2140 0.44 +0.2
829,487 + GFF2140 0.55 -0.7
829,487 + GFF2140 0.55 -1.2
829,493 + GFF2140 0.55 -1.2
829,493 + GFF2140 0.55 -0.1
829,493 + GFF2140 0.55 -0.2
829,493 + GFF2140 0.55 +0.4
829,493 + GFF2140 0.55 +1.9
829,494 - GFF2140 0.55 +0.7
829,494 - GFF2140 0.55 -0.6
829,494 - GFF2140 0.55 -1.9
829,538 + GFF2140 0.59 -0.2
829,637 + GFF2140 0.66 -1.0
829,638 - GFF2140 0.66 +0.7
829,691 + GFF2140 0.70 +0.2
829,692 - GFF2140 0.70 +0.1

Or see this region's nucleotide sequence