Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF210 and GFF211 overlap by 1 nucleotides GFF211 and GFF212 are separated by 272 nucleotides GFF212 and GFF213 are separated by 274 nucleotides GFF213 and GFF214 are separated by 272 nucleotides
GFF210 - hypothetical protein, at 221,396 to 222,958
GFF210
GFF211 - NADH-quinone oxidoreductase subunit E, at 222,958 to 223,452
GFF211
GFF212 - Hydrogen peroxide-inducible genes activator, at 223,725 to 224,654
GFF212
GFF213 - hypothetical protein, at 224,929 to 225,090
GFF213
GFF214 - hypothetical protein, at 225,363 to 226,154
GFF214
Position (kb) 223
224
225 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 223.088 kb on + strand, within GFF211 at 223.257 kb on - strand, within GFF211 at 223.275 kb on - strand, within GFF211 at 223.275 kb on - strand, within GFF211 at 223.442 kb on + strand at 223.443 kb on - strand at 223.443 kb on - strand at 224.135 kb on - strand, within GFF212 at 224.135 kb on - strand, within GFF212 at 224.135 kb on - strand, within GFF212 at 224.176 kb on + strand, within GFF212 at 224.222 kb on - strand, within GFF212 at 224.222 kb on - strand, within GFF212 at 224.225 kb on + strand, within GFF212 at 224.225 kb on + strand, within GFF212 at 224.225 kb on + strand, within GFF212 at 224.225 kb on + strand, within GFF212 at 224.226 kb on - strand, within GFF212 at 224.289 kb on + strand, within GFF212 at 224.649 kb on + strand at 224.663 kb on - strand at 224.860 kb on + strand at 224.866 kb on + strand at 224.867 kb on - strand at 224.868 kb on + strand at 224.898 kb on + strand at 224.899 kb on - strand at 225.074 kb on + strand at 225.074 kb on + strand at 225.075 kb on - strand at 225.097 kb on - strand at 225.144 kb on + strand at 225.144 kb on + strand at 225.144 kb on + strand at 225.145 kb on - strand at 225.145 kb on - strand at 225.289 kb on + strand at 225.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 223,088 + GFF211 0.26 -1.5 223,257 - GFF211 0.60 -1.3 223,275 - GFF211 0.64 -2.3 223,275 - GFF211 0.64 -1.0 223,442 + -1.2 223,443 - -1.6 223,443 - -3.5 224,135 - GFF212 0.44 -1.2 224,135 - GFF212 0.44 -1.1 224,135 - GFF212 0.44 -2.3 224,176 + GFF212 0.48 -0.0 224,222 - GFF212 0.53 -1.4 224,222 - GFF212 0.53 -1.7 224,225 + GFF212 0.54 -2.2 224,225 + GFF212 0.54 -1.1 224,225 + GFF212 0.54 -0.6 224,225 + GFF212 0.54 -0.5 224,226 - GFF212 0.54 -1.7 224,289 + GFF212 0.61 -0.9 224,649 + -2.1 224,663 - +0.8 224,860 + +0.1 224,866 + +0.4 224,867 - -0.1 224,868 + -0.5 224,898 + +0.6 224,899 - -0.1 225,074 + +1.8 225,074 + +1.1 225,075 - +0.0 225,097 - -0.2 225,144 + +0.0 225,144 + -0.3 225,144 + -0.6 225,145 - +0.6 225,145 - -0.8 225,289 + +0.5 225,340 + +0.7
Or see this region's nucleotide sequence