Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF209 and GFF210 are separated by 18 nucleotides GFF210 and GFF211 overlap by 1 nucleotides GFF211 and GFF212 are separated by 272 nucleotides
GFF209 - Putative formate dehydrogenase, at 218,546 to 221,377
GFF209
GFF210 - hypothetical protein, at 221,396 to 222,958
GFF210
GFF211 - NADH-quinone oxidoreductase subunit E, at 222,958 to 223,452
GFF211
GFF212 - Hydrogen peroxide-inducible genes activator, at 223,725 to 224,654
GFF212
Position (kb) 221
222
223 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 220.440 kb on + strand, within GFF209 at 220.441 kb on - strand, within GFF209 at 220.441 kb on - strand, within GFF209 at 220.441 kb on - strand, within GFF209 at 220.441 kb on - strand, within GFF209 at 220.515 kb on + strand, within GFF209 at 220.521 kb on + strand, within GFF209 at 220.521 kb on + strand, within GFF209 at 220.521 kb on + strand, within GFF209 at 220.642 kb on - strand, within GFF209 at 220.682 kb on - strand, within GFF209 at 220.686 kb on + strand, within GFF209 at 220.687 kb on - strand, within GFF209 at 220.687 kb on - strand, within GFF209 at 220.687 kb on - strand, within GFF209 at 220.687 kb on - strand, within GFF209 at 220.893 kb on + strand, within GFF209 at 220.894 kb on - strand, within GFF209 at 220.950 kb on + strand, within GFF209 at 220.950 kb on + strand, within GFF209 at 220.957 kb on - strand, within GFF209 at 221.055 kb on + strand, within GFF209 at 221.055 kb on + strand, within GFF209 at 221.056 kb on - strand, within GFF209 at 221.056 kb on - strand, within GFF209 at 221.056 kb on - strand, within GFF209 at 221.353 kb on - strand at 221.391 kb on + strand at 221.392 kb on - strand at 221.755 kb on - strand, within GFF210 at 221.768 kb on - strand, within GFF210 at 221.790 kb on + strand, within GFF210 at 221.791 kb on - strand, within GFF210 at 221.980 kb on - strand, within GFF210 at 222.153 kb on + strand, within GFF210 at 222.294 kb on + strand, within GFF210 at 222.294 kb on + strand, within GFF210 at 222.294 kb on + strand, within GFF210 at 222.357 kb on + strand, within GFF210 at 222.357 kb on + strand, within GFF210 at 222.429 kb on + strand, within GFF210 at 222.429 kb on + strand, within GFF210 at 222.429 kb on + strand, within GFF210 at 222.430 kb on - strand, within GFF210 at 222.430 kb on - strand, within GFF210 at 222.595 kb on - strand, within GFF210 at 222.595 kb on - strand, within GFF210 at 223.088 kb on + strand, within GFF211 at 223.257 kb on - strand, within GFF211 at 223.275 kb on - strand, within GFF211 at 223.275 kb on - strand, within GFF211 at 223.442 kb on + strand at 223.443 kb on - strand at 223.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 220,440 + GFF209 0.67 -4.0 220,441 - GFF209 0.67 -3.3 220,441 - GFF209 0.67 -1.2 220,441 - GFF209 0.67 -1.6 220,441 - GFF209 0.67 -2.0 220,515 + GFF209 0.70 -0.6 220,521 + GFF209 0.70 +0.1 220,521 + GFF209 0.70 -2.6 220,521 + GFF209 0.70 -1.7 220,642 - GFF209 0.74 -1.9 220,682 - GFF209 0.75 -1.1 220,686 + GFF209 0.76 -2.5 220,687 - GFF209 0.76 +0.1 220,687 - GFF209 0.76 -1.2 220,687 - GFF209 0.76 -2.6 220,687 - GFF209 0.76 -0.7 220,893 + GFF209 0.83 -3.7 220,894 - GFF209 0.83 -2.5 220,950 + GFF209 0.85 -1.1 220,950 + GFF209 0.85 -0.6 220,957 - GFF209 0.85 -1.9 221,055 + GFF209 0.89 -3.2 221,055 + GFF209 0.89 -4.5 221,056 - GFF209 0.89 -2.6 221,056 - GFF209 0.89 -2.6 221,056 - GFF209 0.89 -2.2 221,353 - -2.3 221,391 + -1.0 221,392 - +0.3 221,755 - GFF210 0.23 -1.3 221,768 - GFF210 0.24 -0.5 221,790 + GFF210 0.25 -0.4 221,791 - GFF210 0.25 -1.2 221,980 - GFF210 0.37 -2.4 222,153 + GFF210 0.48 -1.5 222,294 + GFF210 0.57 -1.7 222,294 + GFF210 0.57 -0.8 222,294 + GFF210 0.57 -1.4 222,357 + GFF210 0.61 -1.4 222,357 + GFF210 0.61 -1.9 222,429 + GFF210 0.66 -3.7 222,429 + GFF210 0.66 -3.1 222,429 + GFF210 0.66 -2.4 222,430 - GFF210 0.66 -1.2 222,430 - GFF210 0.66 -1.4 222,595 - GFF210 0.77 -2.2 222,595 - GFF210 0.77 -1.7 223,088 + GFF211 0.26 -1.5 223,257 - GFF211 0.60 -1.3 223,275 - GFF211 0.64 -2.3 223,275 - GFF211 0.64 -1.0 223,442 + -1.2 223,443 - -1.6 223,443 - -3.5
Or see this region's nucleotide sequence