Strain Fitness in Xanthobacter sp. DMC5 around GFF2098

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2097 and GFF2098 are separated by 2 nucleotidesGFF2098 and GFF2099 are separated by 383 nucleotides GFF2097 - Multidrug resistance protein MdtA, at 779,972 to 781,000 GFF2097 GFF2098 - Efflux pump membrane transporter BepE, at 781,003 to 784,275 GFF2098 GFF2099 - hypothetical protein, at 784,659 to 785,705 GFF2099 Position (kb) 781 782 783 784 785Strain fitness (log2 ratio) -2 -1 0 1at 780.560 kb on + strand, within GFF2097at 780.761 kb on + strand, within GFF2097at 780.762 kb on - strand, within GFF2097at 780.762 kb on - strand, within GFF2097at 780.762 kb on - strand, within GFF2097at 780.860 kb on + strand, within GFF2097at 780.860 kb on + strand, within GFF2097at 780.860 kb on + strand, within GFF2097at 780.860 kb on + strand, within GFF2097at 780.860 kb on + strand, within GFF2097at 781.594 kb on + strand, within GFF2098at 781.594 kb on + strand, within GFF2098at 781.595 kb on - strand, within GFF2098at 781.595 kb on - strand, within GFF2098at 781.595 kb on - strand, within GFF2098at 781.595 kb on - strand, within GFF2098at 781.657 kb on + strand, within GFF2098at 781.832 kb on - strand, within GFF2098at 781.882 kb on + strand, within GFF2098at 781.883 kb on - strand, within GFF2098at 781.991 kb on + strand, within GFF2098at 781.992 kb on - strand, within GFF2098at 781.992 kb on - strand, within GFF2098at 782.063 kb on - strand, within GFF2098at 782.236 kb on + strand, within GFF2098at 782.236 kb on + strand, within GFF2098at 782.237 kb on - strand, within GFF2098at 782.473 kb on + strand, within GFF2098at 782.473 kb on + strand, within GFF2098at 782.474 kb on - strand, within GFF2098at 782.474 kb on - strand, within GFF2098at 782.475 kb on + strand, within GFF2098at 782.475 kb on + strand, within GFF2098at 782.475 kb on + strand, within GFF2098at 782.475 kb on + strand, within GFF2098at 782.476 kb on - strand, within GFF2098at 782.647 kb on + strand, within GFF2098at 782.647 kb on + strand, within GFF2098at 782.647 kb on + strand, within GFF2098at 782.647 kb on + strand, within GFF2098at 782.647 kb on + strand, within GFF2098at 782.648 kb on - strand, within GFF2098at 782.648 kb on - strand, within GFF2098at 782.747 kb on - strand, within GFF2098at 782.747 kb on - strand, within GFF2098at 782.747 kb on - strand, within GFF2098at 782.747 kb on - strand, within GFF2098at 783.160 kb on + strand, within GFF2098at 783.335 kb on - strand, within GFF2098at 783.335 kb on - strand, within GFF2098at 783.617 kb on - strand, within GFF2098at 783.823 kb on + strand, within GFF2098at 783.824 kb on - strand, within GFF2098at 783.824 kb on - strand, within GFF2098at 783.824 kb on - strand, within GFF2098at 783.994 kb on + strandat 784.113 kb on + strandat 784.114 kb on - strandat 784.228 kb on + strandat 784.229 kb on - strandat 784.709 kb on + strandat 784.709 kb on + strandat 784.709 kb on + strandat 784.710 kb on - strandat 784.710 kb on - strandat 784.764 kb on - strand, within GFF2099at 784.890 kb on + strand, within GFF2099at 784.890 kb on + strand, within GFF2099at 784.978 kb on + strand, within GFF2099at 784.979 kb on - strand, within GFF2099at 785.044 kb on + strand, within GFF2099at 785.241 kb on + strand, within GFF2099at 785.241 kb on + strand, within GFF2099at 785.242 kb on - strand, within GFF2099at 785.245 kb on - strand, within GFF2099at 785.245 kb on - strand, within GFF2099

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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780,560 + GFF2097 0.57 -0.3
780,761 + GFF2097 0.77 -2.2
780,762 - GFF2097 0.77 +0.5
780,762 - GFF2097 0.77 -0.5
780,762 - GFF2097 0.77 -1.1
780,860 + GFF2097 0.86 -0.1
780,860 + GFF2097 0.86 -0.0
780,860 + GFF2097 0.86 -0.3
780,860 + GFF2097 0.86 -0.2
780,860 + GFF2097 0.86 -0.4
781,594 + GFF2098 0.18 -0.0
781,594 + GFF2098 0.18 -0.8
781,595 - GFF2098 0.18 +0.4
781,595 - GFF2098 0.18 +0.9
781,595 - GFF2098 0.18 +0.6
781,595 - GFF2098 0.18 -1.2
781,657 + GFF2098 0.20 -0.1
781,832 - GFF2098 0.25 -0.6
781,882 + GFF2098 0.27 +1.5
781,883 - GFF2098 0.27 +0.2
781,991 + GFF2098 0.30 -0.2
781,992 - GFF2098 0.30 +0.2
781,992 - GFF2098 0.30 +0.6
782,063 - GFF2098 0.32 -0.4
782,236 + GFF2098 0.38 +0.4
782,236 + GFF2098 0.38 +0.4
782,237 - GFF2098 0.38 -0.5
782,473 + GFF2098 0.45 +0.8
782,473 + GFF2098 0.45 +0.5
782,474 - GFF2098 0.45 +0.3
782,474 - GFF2098 0.45 -1.7
782,475 + GFF2098 0.45 +0.6
782,475 + GFF2098 0.45 -1.5
782,475 + GFF2098 0.45 +0.2
782,475 + GFF2098 0.45 -1.3
782,476 - GFF2098 0.45 +0.0
782,647 + GFF2098 0.50 +1.2
782,647 + GFF2098 0.50 -0.3
782,647 + GFF2098 0.50 -0.9
782,647 + GFF2098 0.50 +0.6
782,647 + GFF2098 0.50 -0.0
782,648 - GFF2098 0.50 -0.6
782,648 - GFF2098 0.50 -0.6
782,747 - GFF2098 0.53 -0.1
782,747 - GFF2098 0.53 -0.2
782,747 - GFF2098 0.53 -1.6
782,747 - GFF2098 0.53 +1.6
783,160 + GFF2098 0.66 -1.2
783,335 - GFF2098 0.71 -0.2
783,335 - GFF2098 0.71 -1.5
783,617 - GFF2098 0.80 -1.3
783,823 + GFF2098 0.86 -0.4
783,824 - GFF2098 0.86 -0.7
783,824 - GFF2098 0.86 -0.3
783,824 - GFF2098 0.86 -0.1
783,994 + +1.2
784,113 + +0.6
784,114 - +0.2
784,228 + +0.6
784,229 - +0.0
784,709 + +1.3
784,709 + -0.3
784,709 + -0.1
784,710 - -0.8
784,710 - -0.2
784,764 - GFF2099 0.10 -0.5
784,890 + GFF2099 0.22 -0.0
784,890 + GFF2099 0.22 +0.2
784,978 + GFF2099 0.30 +1.3
784,979 - GFF2099 0.31 -1.5
785,044 + GFF2099 0.37 +0.2
785,241 + GFF2099 0.56 -1.1
785,241 + GFF2099 0.56 -1.1
785,242 - GFF2099 0.56 -1.1
785,245 - GFF2099 0.56 -0.0
785,245 - GFF2099 0.56 +0.7

Or see this region's nucleotide sequence