Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF204 and GFF205 are separated by 95 nucleotides GFF205 and GFF206 are separated by 82 nucleotides GFF206 and GFF207 are separated by 31 nucleotides GFF207 and GFF208 overlap by 11 nucleotides
GFF204 - hypothetical protein, at 215,037 to 215,423
GFF204
GFF205 - 3-oxoadipate enol-lactonase 2, at 215,519 to 216,292
GFF205
GFF206 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 216,375 to 217,358
GFF206
GFF207 - hypothetical protein, at 217,390 to 217,620
GFF207
GFF208 - Sulfur carrier protein FdhD, at 217,610 to 218,485
GFF208
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 215.481 kb on + strand at 215.718 kb on - strand, within GFF205 at 215.718 kb on - strand, within GFF205 at 215.718 kb on - strand, within GFF205 at 215.718 kb on - strand, within GFF205 at 215.718 kb on - strand, within GFF205 at 216.056 kb on + strand, within GFF205 at 216.057 kb on - strand, within GFF205 at 216.057 kb on - strand, within GFF205 at 216.687 kb on + strand, within GFF206 at 216.688 kb on - strand, within GFF206 at 216.688 kb on - strand, within GFF206 at 216.688 kb on - strand, within GFF206 at 216.688 kb on - strand, within GFF206 at 216.688 kb on - strand, within GFF206 at 217.125 kb on + strand, within GFF206 at 217.126 kb on - strand, within GFF206 at 217.126 kb on - strand, within GFF206 at 217.356 kb on + strand at 217.356 kb on + strand at 217.357 kb on - strand at 217.357 kb on - strand at 217.357 kb on - strand at 217.521 kb on + strand, within GFF207 at 217.587 kb on + strand, within GFF207 at 217.587 kb on + strand, within GFF207 at 217.587 kb on + strand, within GFF207 at 217.589 kb on + strand, within GFF207 at 217.589 kb on + strand, within GFF207 at 217.589 kb on + strand, within GFF207 at 217.590 kb on - strand, within GFF207 at 217.590 kb on - strand, within GFF207 at 217.590 kb on - strand, within GFF207 at 217.611 kb on + strand at 217.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 215,481 + +0.6 215,718 - GFF205 0.26 +0.7 215,718 - GFF205 0.26 -0.0 215,718 - GFF205 0.26 -0.5 215,718 - GFF205 0.26 -0.3 215,718 - GFF205 0.26 +0.9 216,056 + GFF205 0.69 +0.0 216,057 - GFF205 0.70 +0.6 216,057 - GFF205 0.70 +0.6 216,687 + GFF206 0.32 +0.0 216,688 - GFF206 0.32 +0.2 216,688 - GFF206 0.32 +0.7 216,688 - GFF206 0.32 +0.1 216,688 - GFF206 0.32 -0.1 216,688 - GFF206 0.32 +1.1 217,125 + GFF206 0.76 -0.7 217,126 - GFF206 0.76 -0.5 217,126 - GFF206 0.76 +0.6 217,356 + -0.5 217,356 + -0.7 217,357 - -2.4 217,357 - -0.2 217,357 - -1.8 217,521 + GFF207 0.57 -2.4 217,587 + GFF207 0.85 -3.3 217,587 + GFF207 0.85 -2.9 217,587 + GFF207 0.85 -3.2 217,589 + GFF207 0.86 -3.0 217,589 + GFF207 0.86 -2.4 217,589 + GFF207 0.86 -1.5 217,590 - GFF207 0.87 -1.0 217,590 - GFF207 0.87 -1.8 217,590 - GFF207 0.87 -3.2 217,611 + -1.5 217,612 - -0.3
Or see this region's nucleotide sequence