Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2035 and GFF2036 are separated by 18 nucleotides GFF2036 and GFF2037 are separated by 41 nucleotides GFF2037 and GFF2038 are separated by 217 nucleotides
GFF2035 - Gamma-glutamylputrescine oxidoreductase, at 708,297 to 709,601
GFF2035
GFF2036 - hypothetical protein, at 709,620 to 710,342
GFF2036
GFF2037 - Putative 2-aminoethylphosphonate import ATP-binding protein PhnT, at 710,384 to 711,475
GFF2037
GFF2038 - hypothetical protein, at 711,693 to 712,664
GFF2038
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1
2 at 709.453 kb on + strand, within GFF2035 at 709.453 kb on + strand, within GFF2035 at 709.453 kb on + strand, within GFF2035 at 709.454 kb on - strand, within GFF2035 at 709.454 kb on - strand, within GFF2035 at 709.477 kb on + strand at 709.777 kb on + strand, within GFF2036 at 709.778 kb on - strand, within GFF2036 at 709.778 kb on - strand, within GFF2036 at 709.810 kb on + strand, within GFF2036 at 709.810 kb on + strand, within GFF2036 at 709.967 kb on - strand, within GFF2036 at 710.143 kb on + strand, within GFF2036 at 710.143 kb on + strand, within GFF2036 at 710.144 kb on - strand, within GFF2036 at 710.144 kb on - strand, within GFF2036 at 710.144 kb on - strand, within GFF2036 at 710.176 kb on + strand, within GFF2036 at 710.200 kb on + strand, within GFF2036 at 710.201 kb on - strand, within GFF2036 at 710.201 kb on - strand, within GFF2036 at 710.345 kb on + strand at 710.345 kb on + strand at 710.346 kb on - strand at 710.550 kb on + strand, within GFF2037 at 710.551 kb on - strand, within GFF2037 at 710.886 kb on + strand, within GFF2037 at 710.887 kb on - strand, within GFF2037 at 710.887 kb on - strand, within GFF2037 at 710.887 kb on - strand, within GFF2037 at 710.887 kb on - strand, within GFF2037 at 711.201 kb on + strand, within GFF2037 at 711.201 kb on + strand, within GFF2037 at 711.201 kb on + strand, within GFF2037 at 711.202 kb on - strand, within GFF2037 at 711.202 kb on - strand, within GFF2037 at 711.202 kb on - strand, within GFF2037 at 711.415 kb on - strand at 711.470 kb on - strand at 711.470 kb on - strand at 711.691 kb on - strand at 711.909 kb on + strand, within GFF2038 at 711.986 kb on + strand, within GFF2038 at 711.987 kb on - strand, within GFF2038 at 712.179 kb on + strand, within GFF2038 at 712.179 kb on + strand, within GFF2038 at 712.180 kb on - strand, within GFF2038 at 712.180 kb on - strand, within GFF2038 at 712.180 kb on - strand, within GFF2038 at 712.180 kb on - strand, within GFF2038 at 712.221 kb on + strand, within GFF2038 at 712.223 kb on + strand, within GFF2038 at 712.223 kb on + strand, within GFF2038 at 712.224 kb on - strand, within GFF2038 at 712.359 kb on + strand, within GFF2038 at 712.359 kb on + strand, within GFF2038 at 712.360 kb on - strand, within GFF2038
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 709,453 + GFF2035 0.89 +0.4 709,453 + GFF2035 0.89 -1.0 709,453 + GFF2035 0.89 -1.4 709,454 - GFF2035 0.89 +0.7 709,454 - GFF2035 0.89 +0.4 709,477 + +1.4 709,777 + GFF2036 0.22 +0.7 709,778 - GFF2036 0.22 +0.7 709,778 - GFF2036 0.22 +0.2 709,810 + GFF2036 0.26 -1.5 709,810 + GFF2036 0.26 -1.9 709,967 - GFF2036 0.48 +1.4 710,143 + GFF2036 0.72 -0.9 710,143 + GFF2036 0.72 -0.8 710,144 - GFF2036 0.72 -1.7 710,144 - GFF2036 0.72 -0.2 710,144 - GFF2036 0.72 -0.5 710,176 + GFF2036 0.77 -1.0 710,200 + GFF2036 0.80 -0.2 710,201 - GFF2036 0.80 +0.7 710,201 - GFF2036 0.80 -0.1 710,345 + -0.4 710,345 + +0.1 710,346 - -0.5 710,550 + GFF2037 0.15 +0.8 710,551 - GFF2037 0.15 -1.0 710,886 + GFF2037 0.46 +0.2 710,887 - GFF2037 0.46 -1.5 710,887 - GFF2037 0.46 +0.9 710,887 - GFF2037 0.46 -0.7 710,887 - GFF2037 0.46 +1.6 711,201 + GFF2037 0.75 -0.6 711,201 + GFF2037 0.75 +0.5 711,201 + GFF2037 0.75 -0.4 711,202 - GFF2037 0.75 +0.5 711,202 - GFF2037 0.75 +0.1 711,202 - GFF2037 0.75 +1.4 711,415 - -0.2 711,470 - -0.8 711,470 - -0.5 711,691 - +0.2 711,909 + GFF2038 0.22 -0.7 711,986 + GFF2038 0.30 +1.2 711,987 - GFF2038 0.30 +0.4 712,179 + GFF2038 0.50 +1.2 712,179 + GFF2038 0.50 -0.4 712,180 - GFF2038 0.50 -0.6 712,180 - GFF2038 0.50 +0.2 712,180 - GFF2038 0.50 -0.4 712,180 - GFF2038 0.50 +1.4 712,221 + GFF2038 0.54 +0.4 712,223 + GFF2038 0.55 +0.9 712,223 + GFF2038 0.55 +0.0 712,224 - GFF2038 0.55 +1.8 712,359 + GFF2038 0.69 -0.4 712,359 + GFF2038 0.69 -0.2 712,360 - GFF2038 0.69 +0.2
Or see this region's nucleotide sequence