Strain Fitness in Xanthobacter sp. DMC5 around GFF2035

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2034 and GFF2035 are separated by 62 nucleotidesGFF2035 and GFF2036 are separated by 18 nucleotidesGFF2036 and GFF2037 are separated by 41 nucleotides GFF2034 - hypothetical protein, at 707,197 to 708,234 GFF2034 GFF2035 - Gamma-glutamylputrescine oxidoreductase, at 708,297 to 709,601 GFF2035 GFF2036 - hypothetical protein, at 709,620 to 710,342 GFF2036 GFF2037 - Putative 2-aminoethylphosphonate import ATP-binding protein PhnT, at 710,384 to 711,475 GFF2037 Position (kb) 708 709 710Strain fitness (log2 ratio) -2 -1 0 1 2at 707.379 kb on + strand, within GFF2034at 707.379 kb on + strand, within GFF2034at 707.379 kb on + strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.383 kb on - strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.436 kb on - strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.635 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.840 kb on + strand, within GFF2034at 707.841 kb on - strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.859 kb on - strand, within GFF2034at 707.879 kb on + strand, within GFF2034at 707.891 kb on + strand, within GFF2034at 708.325 kb on + strandat 708.325 kb on + strandat 708.325 kb on + strandat 708.326 kb on - strandat 708.326 kb on - strandat 708.326 kb on - strandat 708.367 kb on + strandat 708.367 kb on + strandat 708.367 kb on + strandat 708.367 kb on + strandat 708.368 kb on - strandat 708.485 kb on + strand, within GFF2035at 708.486 kb on - strand, within GFF2035at 708.486 kb on - strand, within GFF2035at 708.487 kb on + strand, within GFF2035at 708.488 kb on - strand, within GFF2035at 708.499 kb on + strand, within GFF2035at 708.500 kb on - strand, within GFF2035at 708.500 kb on - strand, within GFF2035at 708.500 kb on - strand, within GFF2035at 708.583 kb on + strand, within GFF2035at 708.682 kb on + strand, within GFF2035at 708.704 kb on + strand, within GFF2035at 708.739 kb on + strand, within GFF2035at 708.739 kb on + strand, within GFF2035at 708.739 kb on + strand, within GFF2035at 708.740 kb on - strand, within GFF2035at 708.740 kb on - strand, within GFF2035at 709.021 kb on + strand, within GFF2035at 709.021 kb on + strand, within GFF2035at 709.021 kb on + strand, within GFF2035at 709.225 kb on + strand, within GFF2035at 709.453 kb on + strand, within GFF2035at 709.453 kb on + strand, within GFF2035at 709.453 kb on + strand, within GFF2035at 709.454 kb on - strand, within GFF2035at 709.454 kb on - strand, within GFF2035at 709.477 kb on + strandat 709.777 kb on + strand, within GFF2036at 709.778 kb on - strand, within GFF2036at 709.778 kb on - strand, within GFF2036at 709.810 kb on + strand, within GFF2036at 709.810 kb on + strand, within GFF2036at 709.967 kb on - strand, within GFF2036at 710.143 kb on + strand, within GFF2036at 710.143 kb on + strand, within GFF2036at 710.144 kb on - strand, within GFF2036at 710.144 kb on - strand, within GFF2036at 710.144 kb on - strand, within GFF2036at 710.176 kb on + strand, within GFF2036at 710.200 kb on + strand, within GFF2036at 710.201 kb on - strand, within GFF2036at 710.201 kb on - strand, within GFF2036at 710.345 kb on + strandat 710.345 kb on + strandat 710.346 kb on - strandat 710.550 kb on + strand, within GFF2037at 710.551 kb on - strand, within GFF2037

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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707,379 + GFF2034 0.18 -2.3
707,379 + GFF2034 0.18 -0.3
707,379 + GFF2034 0.18 -0.4
707,380 - GFF2034 0.18 -0.7
707,380 - GFF2034 0.18 +1.0
707,380 - GFF2034 0.18 +0.6
707,380 - GFF2034 0.18 +0.4
707,381 + GFF2034 0.18 -0.6
707,381 + GFF2034 0.18 +1.3
707,381 + GFF2034 0.18 +1.3
707,383 - GFF2034 0.18 +1.8
707,435 + GFF2034 0.23 -0.2
707,435 + GFF2034 0.23 -0.7
707,435 + GFF2034 0.23 +0.8
707,436 - GFF2034 0.23 +0.4
707,634 + GFF2034 0.42 +0.4
707,634 + GFF2034 0.42 +0.1
707,634 + GFF2034 0.42 +0.6
707,635 - GFF2034 0.42 +1.1
707,688 - GFF2034 0.47 -0.2
707,688 - GFF2034 0.47 +0.9
707,688 - GFF2034 0.47 -0.1
707,840 + GFF2034 0.62 -0.4
707,841 - GFF2034 0.62 -0.0
707,858 + GFF2034 0.64 +0.2
707,858 + GFF2034 0.64 +0.4
707,858 + GFF2034 0.64 -0.8
707,859 - GFF2034 0.64 -0.5
707,879 + GFF2034 0.66 -0.3
707,891 + GFF2034 0.67 -0.3
708,325 + -0.8
708,325 + -1.5
708,325 + -0.5
708,326 - -1.9
708,326 - -0.4
708,326 - -0.2
708,367 + +0.5
708,367 + -0.8
708,367 + -2.2
708,367 + -0.7
708,368 - +0.4
708,485 + GFF2035 0.14 +0.3
708,486 - GFF2035 0.14 -1.6
708,486 - GFF2035 0.14 -1.2
708,487 + GFF2035 0.15 -0.7
708,488 - GFF2035 0.15 -0.4
708,499 + GFF2035 0.15 -0.3
708,500 - GFF2035 0.16 +0.0
708,500 - GFF2035 0.16 -0.1
708,500 - GFF2035 0.16 -0.7
708,583 + GFF2035 0.22 +0.8
708,682 + GFF2035 0.30 +0.3
708,704 + GFF2035 0.31 -1.0
708,739 + GFF2035 0.34 +0.9
708,739 + GFF2035 0.34 -0.4
708,739 + GFF2035 0.34 -0.8
708,740 - GFF2035 0.34 -0.5
708,740 - GFF2035 0.34 -0.5
709,021 + GFF2035 0.55 -0.2
709,021 + GFF2035 0.55 +1.0
709,021 + GFF2035 0.55 +0.8
709,225 + GFF2035 0.71 -0.1
709,453 + GFF2035 0.89 +0.4
709,453 + GFF2035 0.89 -1.0
709,453 + GFF2035 0.89 -1.4
709,454 - GFF2035 0.89 +0.7
709,454 - GFF2035 0.89 +0.4
709,477 + +1.4
709,777 + GFF2036 0.22 +0.7
709,778 - GFF2036 0.22 +0.7
709,778 - GFF2036 0.22 +0.2
709,810 + GFF2036 0.26 -1.5
709,810 + GFF2036 0.26 -1.9
709,967 - GFF2036 0.48 +1.4
710,143 + GFF2036 0.72 -0.9
710,143 + GFF2036 0.72 -0.8
710,144 - GFF2036 0.72 -1.7
710,144 - GFF2036 0.72 -0.2
710,144 - GFF2036 0.72 -0.5
710,176 + GFF2036 0.77 -1.0
710,200 + GFF2036 0.80 -0.2
710,201 - GFF2036 0.80 +0.7
710,201 - GFF2036 0.80 -0.1
710,345 + -0.4
710,345 + +0.1
710,346 - -0.5
710,550 + GFF2037 0.15 +0.8
710,551 - GFF2037 0.15 -1.0

Or see this region's nucleotide sequence