Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF190 and GFF191 overlap by 4 nucleotides GFF191 and GFF192 overlap by 4 nucleotides GFF192 and GFF193 overlap by 4 nucleotides GFF193 and GFF194 are separated by 2 nucleotides
GFF190 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 199,525 to 200,967
GFF190
GFF191 - hypothetical protein, at 200,964 to 201,179
GFF191
GFF192 - Vitamin B12 import ATP-binding protein BtuD, at 201,176 to 202,237
GFF192
GFF193 - Glutathione transport system permease protein GsiD, at 202,234 to 203,121
GFF193
GFF194 - Glutathione transport system permease protein GsiC, at 203,124 to 204,068
GFF194
Position (kb) 201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 200.189 kb on + strand, within GFF190 at 200.368 kb on + strand, within GFF190 at 200.429 kb on + strand, within GFF190 at 200.430 kb on - strand, within GFF190 at 200.430 kb on - strand, within GFF190 at 200.684 kb on + strand, within GFF190 at 200.685 kb on - strand, within GFF190 at 201.458 kb on - strand, within GFF192 at 201.522 kb on + strand, within GFF192 at 201.522 kb on + strand, within GFF192 at 201.522 kb on + strand, within GFF192 at 201.523 kb on - strand, within GFF192 at 201.523 kb on - strand, within GFF192 at 201.549 kb on + strand, within GFF192 at 201.549 kb on + strand, within GFF192 at 201.550 kb on - strand, within GFF192 at 201.585 kb on + strand, within GFF192 at 201.586 kb on - strand, within GFF192 at 201.586 kb on - strand, within GFF192 at 201.586 kb on - strand, within GFF192 at 201.586 kb on - strand, within GFF192 at 201.616 kb on + strand, within GFF192 at 201.616 kb on + strand, within GFF192 at 201.903 kb on + strand, within GFF192 at 201.903 kb on + strand, within GFF192 at 201.903 kb on + strand, within GFF192 at 201.903 kb on + strand, within GFF192 at 201.903 kb on + strand, within GFF192 at 201.903 kb on + strand, within GFF192 at 201.903 kb on + strand, within GFF192 at 201.904 kb on - strand, within GFF192 at 201.904 kb on - strand, within GFF192 at 201.904 kb on - strand, within GFF192 at 201.904 kb on - strand, within GFF192 at 201.904 kb on - strand, within GFF192 at 201.904 kb on - strand, within GFF192 at 201.904 kb on - strand, within GFF192 at 201.904 kb on - strand, within GFF192 at 201.960 kb on + strand, within GFF192 at 202.344 kb on - strand, within GFF193 at 202.344 kb on - strand, within GFF193 at 202.344 kb on - strand, within GFF193 at 202.452 kb on + strand, within GFF193 at 202.452 kb on + strand, within GFF193 at 202.453 kb on - strand, within GFF193 at 202.453 kb on - strand, within GFF193 at 202.453 kb on - strand, within GFF193 at 202.453 kb on - strand, within GFF193 at 202.453 kb on - strand, within GFF193 at 202.466 kb on + strand, within GFF193 at 202.466 kb on + strand, within GFF193 at 202.467 kb on - strand, within GFF193 at 202.467 kb on - strand, within GFF193 at 202.706 kb on + strand, within GFF193 at 202.706 kb on + strand, within GFF193 at 202.706 kb on + strand, within GFF193 at 202.707 kb on - strand, within GFF193 at 202.707 kb on - strand, within GFF193 at 202.723 kb on - strand, within GFF193 at 202.758 kb on - strand, within GFF193 at 202.844 kb on + strand, within GFF193 at 202.895 kb on + strand, within GFF193 at 202.944 kb on - strand, within GFF193 at 203.227 kb on - strand, within GFF194
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 200,189 + GFF190 0.46 -2.2 200,368 + GFF190 0.58 -0.8 200,429 + GFF190 0.63 -0.5 200,430 - GFF190 0.63 -0.1 200,430 - GFF190 0.63 +0.6 200,684 + GFF190 0.80 -0.2 200,685 - GFF190 0.80 -0.1 201,458 - GFF192 0.27 -1.0 201,522 + GFF192 0.33 +0.2 201,522 + GFF192 0.33 +0.1 201,522 + GFF192 0.33 -1.4 201,523 - GFF192 0.33 -1.6 201,523 - GFF192 0.33 +0.0 201,549 + GFF192 0.35 -0.9 201,549 + GFF192 0.35 +0.6 201,550 - GFF192 0.35 +0.1 201,585 + GFF192 0.39 +0.3 201,586 - GFF192 0.39 -0.0 201,586 - GFF192 0.39 +1.5 201,586 - GFF192 0.39 -1.9 201,586 - GFF192 0.39 -0.6 201,616 + GFF192 0.41 -2.9 201,616 + GFF192 0.41 -0.8 201,903 + GFF192 0.68 +0.6 201,903 + GFF192 0.68 -0.0 201,903 + GFF192 0.68 -0.6 201,903 + GFF192 0.68 +0.3 201,903 + GFF192 0.68 -3.0 201,903 + GFF192 0.68 -0.3 201,903 + GFF192 0.68 -0.2 201,904 - GFF192 0.69 -1.3 201,904 - GFF192 0.69 +0.2 201,904 - GFF192 0.69 +0.3 201,904 - GFF192 0.69 -0.4 201,904 - GFF192 0.69 -1.4 201,904 - GFF192 0.69 -0.4 201,904 - GFF192 0.69 +0.1 201,904 - GFF192 0.69 -0.1 201,960 + GFF192 0.74 -0.8 202,344 - GFF193 0.12 +2.0 202,344 - GFF193 0.12 +1.4 202,344 - GFF193 0.12 +0.8 202,452 + GFF193 0.25 -1.0 202,452 + GFF193 0.25 +1.0 202,453 - GFF193 0.25 -0.4 202,453 - GFF193 0.25 +0.7 202,453 - GFF193 0.25 +0.7 202,453 - GFF193 0.25 +0.2 202,453 - GFF193 0.25 -3.3 202,466 + GFF193 0.26 +0.4 202,466 + GFF193 0.26 -0.0 202,467 - GFF193 0.26 +0.1 202,467 - GFF193 0.26 +0.2 202,706 + GFF193 0.53 -0.4 202,706 + GFF193 0.53 -0.2 202,706 + GFF193 0.53 +0.9 202,707 - GFF193 0.53 +0.1 202,707 - GFF193 0.53 +0.2 202,723 - GFF193 0.55 -0.7 202,758 - GFF193 0.59 +1.1 202,844 + GFF193 0.69 -0.1 202,895 + GFF193 0.74 -0.5 202,944 - GFF193 0.80 +1.1 203,227 - GFF194 0.11 +0.9
Or see this region's nucleotide sequence