Strain Fitness in Xanthobacter sp. DMC5 around GFF19

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF17 and GFF18 are separated by 51 nucleotidesGFF18 and GFF19 are separated by 62 nucleotidesGFF19 and GFF20 are separated by 249 nucleotidesGFF20 and GFF21 are separated by 82 nucleotides GFF17 - hypothetical protein, at 21,757 to 22,917 GFF17 GFF18 - hypothetical protein, at 22,969 to 23,295 GFF18 GFF19 - N-substituted formamide deformylase, at 23,358 to 25,175 GFF19 GFF20 - hypothetical protein, at 25,425 to 25,838 GFF20 GFF21 - Regulator of nucleoside diphosphate kinase, at 25,921 to 26,337 GFF21 Position (kb) 23 24 25 26Strain fitness (log2 ratio) -2 -1 0 1at 22.428 kb on + strand, within GFF17at 22.466 kb on - strand, within GFF17at 22.466 kb on - strand, within GFF17at 22.566 kb on + strand, within GFF17at 22.566 kb on + strand, within GFF17at 22.567 kb on - strand, within GFF17at 22.567 kb on - strand, within GFF17at 22.693 kb on + strand, within GFF17at 22.741 kb on + strand, within GFF17at 22.741 kb on + strand, within GFF17at 22.742 kb on - strand, within GFF17at 22.916 kb on - strandat 22.970 kb on + strandat 22.971 kb on - strandat 23.108 kb on + strand, within GFF18at 23.108 kb on + strand, within GFF18at 23.150 kb on + strand, within GFF18at 23.150 kb on + strand, within GFF18at 23.151 kb on - strand, within GFF18at 23.151 kb on - strand, within GFF18at 23.302 kb on + strandat 23.303 kb on - strandat 23.303 kb on - strandat 23.303 kb on - strandat 23.303 kb on - strandat 23.379 kb on - strandat 23.654 kb on - strand, within GFF19at 23.665 kb on + strand, within GFF19at 23.734 kb on + strand, within GFF19at 23.734 kb on + strand, within GFF19at 23.735 kb on - strand, within GFF19at 23.872 kb on + strand, within GFF19at 23.872 kb on + strand, within GFF19at 23.872 kb on + strand, within GFF19at 24.103 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.460 kb on + strand, within GFF19at 24.460 kb on + strand, within GFF19at 24.460 kb on + strand, within GFF19at 24.461 kb on - strand, within GFF19at 24.494 kb on - strand, within GFF19at 24.497 kb on - strand, within GFF19at 24.716 kb on - strand, within GFF19at 24.716 kb on - strand, within GFF19at 24.987 kb on + strand, within GFF19at 24.987 kb on + strand, within GFF19at 25.147 kb on + strandat 25.147 kb on + strandat 25.229 kb on - strandat 25.234 kb on - strandat 25.325 kb on - strandat 25.354 kb on + strandat 25.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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22,428 + GFF17 0.58 +0.5
22,466 - GFF17 0.61 -0.0
22,466 - GFF17 0.61 -1.9
22,566 + GFF17 0.70 -0.7
22,566 + GFF17 0.70 +1.6
22,567 - GFF17 0.70 +0.1
22,567 - GFF17 0.70 -0.1
22,693 + GFF17 0.81 -0.7
22,741 + GFF17 0.85 -0.9
22,741 + GFF17 0.85 +1.1
22,742 - GFF17 0.85 +0.3
22,916 - +0.1
22,970 + -0.6
22,971 - -1.1
23,108 + GFF18 0.43 -0.0
23,108 + GFF18 0.43 -0.3
23,150 + GFF18 0.55 +0.6
23,150 + GFF18 0.55 +0.8
23,151 - GFF18 0.56 +0.6
23,151 - GFF18 0.56 +0.8
23,302 + -0.5
23,303 - +0.1
23,303 - -0.5
23,303 - -1.1
23,303 - -0.6
23,379 - +0.7
23,654 - GFF19 0.16 -1.0
23,665 + GFF19 0.17 +1.1
23,734 + GFF19 0.21 -0.8
23,734 + GFF19 0.21 +0.4
23,735 - GFF19 0.21 +0.6
23,872 + GFF19 0.28 +0.0
23,872 + GFF19 0.28 +0.7
23,872 + GFF19 0.28 -1.9
24,103 + GFF19 0.41 -0.4
24,280 + GFF19 0.51 -0.1
24,280 + GFF19 0.51 +0.6
24,280 + GFF19 0.51 +0.0
24,280 + GFF19 0.51 +0.4
24,280 + GFF19 0.51 -0.2
24,280 + GFF19 0.51 -1.0
24,280 + GFF19 0.51 +1.0
24,281 - GFF19 0.51 -1.0
24,281 - GFF19 0.51 -0.6
24,281 - GFF19 0.51 +0.5
24,281 - GFF19 0.51 +1.5
24,281 - GFF19 0.51 -0.5
24,460 + GFF19 0.61 +0.4
24,460 + GFF19 0.61 +0.0
24,460 + GFF19 0.61 -0.5
24,461 - GFF19 0.61 -1.2
24,494 - GFF19 0.62 -0.5
24,497 - GFF19 0.63 -0.4
24,716 - GFF19 0.75 +0.3
24,716 - GFF19 0.75 -1.7
24,987 + GFF19 0.90 +0.3
24,987 + GFF19 0.90 -0.3
25,147 + -1.5
25,147 + -1.7
25,229 - -0.5
25,234 - -0.5
25,325 - +0.1
25,354 + -0.8
25,399 + -0.3

Or see this region's nucleotide sequence