Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF188 and GFF189 overlap by 1 nucleotides GFF189 and GFF190 overlap by 1 nucleotides
GFF188 - N-carbamoyl-L-amino-acid hydrolase, at 197,286 to 198,536
GFF188
GFF189 - Oligopeptide transport ATP-binding protein OppD, at 198,536 to 199,525
GFF189
GFF190 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 199,525 to 200,967
GFF190
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1 at 197.575 kb on - strand, within GFF188 at 197.846 kb on + strand, within GFF188 at 197.846 kb on + strand, within GFF188 at 197.846 kb on + strand, within GFF188 at 197.847 kb on - strand, within GFF188 at 197.879 kb on - strand, within GFF188 at 198.097 kb on + strand, within GFF188 at 198.098 kb on - strand, within GFF188 at 198.098 kb on - strand, within GFF188 at 198.507 kb on - strand at 198.539 kb on - strand at 198.575 kb on + strand at 198.575 kb on + strand at 198.575 kb on + strand at 198.575 kb on + strand at 198.575 kb on + strand at 198.576 kb on - strand at 198.576 kb on - strand at 198.576 kb on - strand at 198.831 kb on + strand, within GFF189 at 198.831 kb on + strand, within GFF189 at 198.831 kb on + strand, within GFF189 at 198.831 kb on + strand, within GFF189 at 198.831 kb on + strand, within GFF189 at 198.832 kb on - strand, within GFF189 at 198.832 kb on - strand, within GFF189 at 198.832 kb on - strand, within GFF189 at 198.832 kb on - strand, within GFF189 at 198.832 kb on - strand, within GFF189 at 198.832 kb on - strand, within GFF189 at 198.832 kb on - strand, within GFF189 at 198.832 kb on - strand, within GFF189 at 199.065 kb on + strand, within GFF189 at 199.065 kb on + strand, within GFF189 at 199.197 kb on + strand, within GFF189 at 199.197 kb on + strand, within GFF189 at 199.198 kb on - strand, within GFF189 at 199.198 kb on - strand, within GFF189 at 199.198 kb on - strand, within GFF189 at 199.198 kb on - strand, within GFF189 at 199.198 kb on - strand, within GFF189 at 199.542 kb on + strand at 199.556 kb on + strand at 199.691 kb on + strand, within GFF190 at 199.691 kb on + strand, within GFF190 at 199.691 kb on + strand, within GFF190 at 199.692 kb on - strand, within GFF190 at 199.692 kb on - strand, within GFF190 at 199.867 kb on + strand, within GFF190 at 199.868 kb on - strand, within GFF190 at 199.880 kb on + strand, within GFF190 at 199.881 kb on - strand, within GFF190 at 199.881 kb on - strand, within GFF190 at 199.881 kb on - strand, within GFF190 at 199.937 kb on + strand, within GFF190 at 199.938 kb on - strand, within GFF190 at 199.938 kb on - strand, within GFF190 at 200.129 kb on + strand, within GFF190 at 200.129 kb on + strand, within GFF190 at 200.129 kb on + strand, within GFF190 at 200.129 kb on + strand, within GFF190 at 200.129 kb on + strand, within GFF190 at 200.130 kb on - strand, within GFF190 at 200.130 kb on - strand, within GFF190 at 200.130 kb on - strand, within GFF190 at 200.189 kb on + strand, within GFF190 at 200.368 kb on + strand, within GFF190 at 200.429 kb on + strand, within GFF190 at 200.430 kb on - strand, within GFF190 at 200.430 kb on - strand, within GFF190
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 197,575 - GFF188 0.23 +0.2 197,846 + GFF188 0.45 -0.8 197,846 + GFF188 0.45 +1.4 197,846 + GFF188 0.45 -0.4 197,847 - GFF188 0.45 -0.5 197,879 - GFF188 0.47 -1.2 198,097 + GFF188 0.65 -0.4 198,098 - GFF188 0.65 -0.2 198,098 - GFF188 0.65 +0.8 198,507 - -0.2 198,539 - -0.7 198,575 + +0.3 198,575 + +1.1 198,575 + -0.8 198,575 + -1.0 198,575 + -0.1 198,576 - +0.6 198,576 - -1.2 198,576 - +1.6 198,831 + GFF189 0.30 -0.0 198,831 + GFF189 0.30 -0.7 198,831 + GFF189 0.30 -2.1 198,831 + GFF189 0.30 -0.2 198,831 + GFF189 0.30 +0.1 198,832 - GFF189 0.30 -0.1 198,832 - GFF189 0.30 -0.5 198,832 - GFF189 0.30 -0.1 198,832 - GFF189 0.30 +0.2 198,832 - GFF189 0.30 -1.6 198,832 - GFF189 0.30 +0.4 198,832 - GFF189 0.30 -0.6 198,832 - GFF189 0.30 +0.7 199,065 + GFF189 0.53 -0.8 199,065 + GFF189 0.53 +0.6 199,197 + GFF189 0.67 +0.2 199,197 + GFF189 0.67 +0.2 199,198 - GFF189 0.67 -0.8 199,198 - GFF189 0.67 -0.5 199,198 - GFF189 0.67 -0.4 199,198 - GFF189 0.67 -0.2 199,198 - GFF189 0.67 +0.8 199,542 + -0.1 199,556 + +0.6 199,691 + GFF190 0.12 +0.4 199,691 + GFF190 0.12 -0.0 199,691 + GFF190 0.12 -0.4 199,692 - GFF190 0.12 +1.2 199,692 - GFF190 0.12 +0.1 199,867 + GFF190 0.24 -2.0 199,868 - GFF190 0.24 -0.4 199,880 + GFF190 0.25 +0.0 199,881 - GFF190 0.25 +0.5 199,881 - GFF190 0.25 +0.3 199,881 - GFF190 0.25 +0.1 199,937 + GFF190 0.29 +0.1 199,938 - GFF190 0.29 +0.2 199,938 - GFF190 0.29 -1.0 200,129 + GFF190 0.42 -0.3 200,129 + GFF190 0.42 -0.2 200,129 + GFF190 0.42 -0.0 200,129 + GFF190 0.42 +0.6 200,129 + GFF190 0.42 +0.7 200,130 - GFF190 0.42 +0.4 200,130 - GFF190 0.42 +0.0 200,130 - GFF190 0.42 -0.4 200,189 + GFF190 0.46 -2.2 200,368 + GFF190 0.58 -0.8 200,429 + GFF190 0.63 -0.5 200,430 - GFF190 0.63 -0.1 200,430 - GFF190 0.63 +0.6
Or see this region's nucleotide sequence