Strain Fitness in Xanthobacter sp. DMC5 around GFF182

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF180 and GFF181 overlap by 1 nucleotidesGFF181 and GFF182 are separated by 10 nucleotidesGFF182 and GFF183 are separated by 24 nucleotides GFF180 - hypothetical protein, at 188,493 to 189,674 GFF180 GFF181 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 189,674 to 190,501 GFF181 GFF182 - Long-chain-fatty-acid--CoA ligase FadD15, at 190,512 to 192,317 GFF182 GFF183 - Putative acyltransferase, at 192,342 to 193,550 GFF183 Position (kb) 190 191 192 193Strain fitness (log2 ratio) -2 -1 0 1at 189.609 kb on + strandat 189.609 kb on + strandat 189.609 kb on + strandat 189.725 kb on + strandat 189.725 kb on + strandat 189.726 kb on - strandat 189.726 kb on - strandat 189.872 kb on - strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.076 kb on + strand, within GFF181at 190.077 kb on - strand, within GFF181at 190.082 kb on + strand, within GFF181at 190.082 kb on + strand, within GFF181at 190.083 kb on - strand, within GFF181at 190.083 kb on - strand, within GFF181at 190.125 kb on - strand, within GFF181at 190.334 kb on + strand, within GFF181at 190.334 kb on + strand, within GFF181at 190.335 kb on - strand, within GFF181at 190.335 kb on - strand, within GFF181at 190.340 kb on + strand, within GFF181at 190.340 kb on + strand, within GFF181at 190.418 kb on + strand, within GFF181at 190.455 kb on - strandat 190.472 kb on + strandat 190.473 kb on - strandat 190.473 kb on - strandat 190.641 kb on + strandat 190.641 kb on + strandat 190.791 kb on + strand, within GFF182at 190.791 kb on + strand, within GFF182at 190.792 kb on - strand, within GFF182at 190.792 kb on - strand, within GFF182at 190.821 kb on + strand, within GFF182at 190.821 kb on + strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.956 kb on + strand, within GFF182at 190.957 kb on - strand, within GFF182at 190.957 kb on - strand, within GFF182at 190.957 kb on - strand, within GFF182at 191.085 kb on + strand, within GFF182at 191.085 kb on + strand, within GFF182at 191.085 kb on + strand, within GFF182at 191.130 kb on + strand, within GFF182at 191.130 kb on + strand, within GFF182at 191.130 kb on + strand, within GFF182at 191.130 kb on + strand, within GFF182at 191.131 kb on - strand, within GFF182at 191.131 kb on - strand, within GFF182at 191.131 kb on - strand, within GFF182at 191.205 kb on + strand, within GFF182at 191.205 kb on + strand, within GFF182at 191.205 kb on + strand, within GFF182at 191.206 kb on - strand, within GFF182at 191.424 kb on + strand, within GFF182at 191.523 kb on + strand, within GFF182at 191.524 kb on - strand, within GFF182at 191.649 kb on + strand, within GFF182at 191.649 kb on + strand, within GFF182at 191.650 kb on - strand, within GFF182at 191.657 kb on + strand, within GFF182at 191.703 kb on - strand, within GFF182at 191.799 kb on + strand, within GFF182at 191.799 kb on + strand, within GFF182at 191.802 kb on + strand, within GFF182at 191.802 kb on + strand, within GFF182at 191.803 kb on - strand, within GFF182at 191.803 kb on - strand, within GFF182at 191.896 kb on + strand, within GFF182at 191.896 kb on + strand, within GFF182at 191.921 kb on + strand, within GFF182at 191.921 kb on + strand, within GFF182at 192.021 kb on + strand, within GFF182at 192.022 kb on - strand, within GFF182at 192.022 kb on - strand, within GFF182at 192.022 kb on - strand, within GFF182at 192.045 kb on + strand, within GFF182at 192.046 kb on - strand, within GFF182at 192.090 kb on + strand, within GFF182at 192.286 kb on - strandat 192.310 kb on - strandat 192.354 kb on + strandat 192.355 kb on - strandat 192.355 kb on - strandat 192.355 kb on - strandat 192.355 kb on - strandat 192.355 kb on - strandat 192.573 kb on + strand, within GFF183at 192.574 kb on - strand, within GFF183at 192.822 kb on + strand, within GFF183at 192.822 kb on + strand, within GFF183at 192.822 kb on + strand, within GFF183at 192.822 kb on + strand, within GFF183at 192.822 kb on + strand, within GFF183at 192.823 kb on - strand, within GFF183at 192.823 kb on - strand, within GFF183at 192.929 kb on + strand, within GFF183at 192.930 kb on - strand, within GFF183at 193.063 kb on - strand, within GFF183

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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189,609 + -0.1
189,609 + -0.0
189,609 + +0.4
189,725 + -0.8
189,725 + +0.2
189,726 - -1.3
189,726 - -0.9
189,872 - GFF181 0.24 -0.4
190,016 + GFF181 0.41 -0.4
190,016 + GFF181 0.41 -0.1
190,016 + GFF181 0.41 -1.7
190,076 + GFF181 0.49 -0.2
190,077 - GFF181 0.49 -0.2
190,082 + GFF181 0.49 +0.1
190,082 + GFF181 0.49 -0.6
190,083 - GFF181 0.49 +0.6
190,083 - GFF181 0.49 -0.1
190,125 - GFF181 0.54 +0.1
190,334 + GFF181 0.80 -0.6
190,334 + GFF181 0.80 -0.1
190,335 - GFF181 0.80 -2.6
190,335 - GFF181 0.80 -0.9
190,340 + GFF181 0.80 -0.3
190,340 + GFF181 0.80 +0.4
190,418 + GFF181 0.90 -0.5
190,455 - +0.4
190,472 + +0.1
190,473 - +0.6
190,473 - -0.5
190,641 + -1.7
190,641 + +0.5
190,791 + GFF182 0.15 -0.4
190,791 + GFF182 0.15 +0.6
190,792 - GFF182 0.16 -2.7
190,792 - GFF182 0.16 +0.6
190,821 + GFF182 0.17 +0.6
190,821 + GFF182 0.17 -0.1
190,822 - GFF182 0.17 +1.0
190,822 - GFF182 0.17 -1.0
190,822 - GFF182 0.17 -0.9
190,822 - GFF182 0.17 -1.3
190,822 - GFF182 0.17 -0.9
190,822 - GFF182 0.17 +0.3
190,822 - GFF182 0.17 -1.3
190,956 + GFF182 0.25 -0.4
190,957 - GFF182 0.25 +1.2
190,957 - GFF182 0.25 -0.8
190,957 - GFF182 0.25 -1.2
191,085 + GFF182 0.32 -0.2
191,085 + GFF182 0.32 -0.1
191,085 + GFF182 0.32 -0.0
191,130 + GFF182 0.34 -0.6
191,130 + GFF182 0.34 -1.7
191,130 + GFF182 0.34 -0.0
191,130 + GFF182 0.34 +1.0
191,131 - GFF182 0.34 +0.1
191,131 - GFF182 0.34 +0.1
191,131 - GFF182 0.34 +0.2
191,205 + GFF182 0.38 -2.6
191,205 + GFF182 0.38 +0.0
191,205 + GFF182 0.38 +0.2
191,206 - GFF182 0.38 +0.1
191,424 + GFF182 0.50 -0.5
191,523 + GFF182 0.56 -1.6
191,524 - GFF182 0.56 -0.9
191,649 + GFF182 0.63 +0.2
191,649 + GFF182 0.63 -0.1
191,650 - GFF182 0.63 -1.6
191,657 + GFF182 0.63 -0.4
191,703 - GFF182 0.66 +0.1
191,799 + GFF182 0.71 +0.1
191,799 + GFF182 0.71 +0.3
191,802 + GFF182 0.71 +0.7
191,802 + GFF182 0.71 -0.3
191,803 - GFF182 0.71 -0.1
191,803 - GFF182 0.71 +0.7
191,896 + GFF182 0.77 +1.0
191,896 + GFF182 0.77 -0.1
191,921 + GFF182 0.78 -0.7
191,921 + GFF182 0.78 +0.3
192,021 + GFF182 0.84 +0.2
192,022 - GFF182 0.84 -0.9
192,022 - GFF182 0.84 +0.5
192,022 - GFF182 0.84 +0.7
192,045 + GFF182 0.85 -0.6
192,046 - GFF182 0.85 -1.0
192,090 + GFF182 0.87 -0.2
192,286 - -0.9
192,310 - -0.1
192,354 + +1.3
192,355 - -1.8
192,355 - +0.0
192,355 - +0.6
192,355 - +0.4
192,355 - +1.2
192,573 + GFF183 0.19 +1.2
192,574 - GFF183 0.19 +0.0
192,822 + GFF183 0.40 -0.4
192,822 + GFF183 0.40 -0.1
192,822 + GFF183 0.40 -0.2
192,822 + GFF183 0.40 +0.2
192,822 + GFF183 0.40 +0.0
192,823 - GFF183 0.40 -0.4
192,823 - GFF183 0.40 +0.4
192,929 + GFF183 0.49 -1.4
192,930 - GFF183 0.49 -0.6
193,063 - GFF183 0.60 +0.0

Or see this region's nucleotide sequence