Strain Fitness in Xanthobacter sp. DMC5 around GFF18

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF17 and GFF18 are separated by 51 nucleotidesGFF18 and GFF19 are separated by 62 nucleotides GFF17 - hypothetical protein, at 21,757 to 22,917 GFF17 GFF18 - hypothetical protein, at 22,969 to 23,295 GFF18 GFF19 - N-substituted formamide deformylase, at 23,358 to 25,175 GFF19 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.130 kb on - strand, within GFF17at 22.199 kb on - strand, within GFF17at 22.428 kb on + strand, within GFF17at 22.466 kb on - strand, within GFF17at 22.466 kb on - strand, within GFF17at 22.566 kb on + strand, within GFF17at 22.566 kb on + strand, within GFF17at 22.567 kb on - strand, within GFF17at 22.567 kb on - strand, within GFF17at 22.693 kb on + strand, within GFF17at 22.741 kb on + strand, within GFF17at 22.741 kb on + strand, within GFF17at 22.742 kb on - strand, within GFF17at 22.916 kb on - strandat 22.970 kb on + strandat 22.971 kb on - strandat 23.108 kb on + strand, within GFF18at 23.108 kb on + strand, within GFF18at 23.150 kb on + strand, within GFF18at 23.150 kb on + strand, within GFF18at 23.151 kb on - strand, within GFF18at 23.151 kb on - strand, within GFF18at 23.302 kb on + strandat 23.303 kb on - strandat 23.303 kb on - strandat 23.303 kb on - strandat 23.303 kb on - strandat 23.379 kb on - strandat 23.654 kb on - strand, within GFF19at 23.665 kb on + strand, within GFF19at 23.734 kb on + strand, within GFF19at 23.734 kb on + strand, within GFF19at 23.735 kb on - strand, within GFF19at 23.872 kb on + strand, within GFF19at 23.872 kb on + strand, within GFF19at 23.872 kb on + strand, within GFF19at 24.103 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.280 kb on + strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.281 kb on - strand, within GFF19at 24.281 kb on - strand, within GFF19

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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22,130 - GFF17 0.32 +0.1
22,199 - GFF17 0.38 -0.5
22,428 + GFF17 0.58 +0.5
22,466 - GFF17 0.61 -0.0
22,466 - GFF17 0.61 -1.9
22,566 + GFF17 0.70 -0.7
22,566 + GFF17 0.70 +1.6
22,567 - GFF17 0.70 +0.1
22,567 - GFF17 0.70 -0.1
22,693 + GFF17 0.81 -0.7
22,741 + GFF17 0.85 -0.9
22,741 + GFF17 0.85 +1.1
22,742 - GFF17 0.85 +0.3
22,916 - +0.1
22,970 + -0.6
22,971 - -1.1
23,108 + GFF18 0.43 -0.0
23,108 + GFF18 0.43 -0.3
23,150 + GFF18 0.55 +0.6
23,150 + GFF18 0.55 +0.8
23,151 - GFF18 0.56 +0.6
23,151 - GFF18 0.56 +0.8
23,302 + -0.5
23,303 - +0.1
23,303 - -0.5
23,303 - -1.1
23,303 - -0.6
23,379 - +0.7
23,654 - GFF19 0.16 -1.0
23,665 + GFF19 0.17 +1.1
23,734 + GFF19 0.21 -0.8
23,734 + GFF19 0.21 +0.4
23,735 - GFF19 0.21 +0.6
23,872 + GFF19 0.28 +0.0
23,872 + GFF19 0.28 +0.7
23,872 + GFF19 0.28 -1.9
24,103 + GFF19 0.41 -0.4
24,280 + GFF19 0.51 -0.1
24,280 + GFF19 0.51 +0.6
24,280 + GFF19 0.51 +0.0
24,280 + GFF19 0.51 +0.4
24,280 + GFF19 0.51 -0.2
24,280 + GFF19 0.51 -1.0
24,280 + GFF19 0.51 +1.0
24,281 - GFF19 0.51 -1.0
24,281 - GFF19 0.51 -0.6
24,281 - GFF19 0.51 +0.5
24,281 - GFF19 0.51 +1.5
24,281 - GFF19 0.51 -0.5

Or see this region's nucleotide sequence