Strain Fitness in Xanthobacter sp. DMC5 around GFF1796

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1795 and GFF1796 are separated by 122 nucleotidesGFF1796 and GFF1797 are separated by 159 nucleotides GFF1795 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 444,358 to 447,162 GFF1795 GFF1796 - hypothetical protein, at 447,285 to 447,755 GFF1796 GFF1797 - Biosynthetic peptidoglycan transglycosylase, at 447,915 to 450,140 GFF1797 Position (kb) 447 448Strain fitness (log2 ratio) -2 -1 0 1at 447.274 kb on - strandat 447.274 kb on - strandat 447.708 kb on + strand, within GFF1796at 447.736 kb on - strandat 447.897 kb on + strandat 448.431 kb on + strand, within GFF1797at 448.647 kb on + strand, within GFF1797

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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447,274 - +0.0
447,274 - -0.7
447,708 + GFF1796 0.90 -0.6
447,736 - -1.3
447,897 + -1.8
448,431 + GFF1797 0.23 -0.1
448,647 + GFF1797 0.33 +0.6

Or see this region's nucleotide sequence