Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1787 and GFF1788 are separated by 33 nucleotides GFF1788 and GFF1789 are separated by 85 nucleotides
GFF1787 - HTH-type transcriptional regulator HdfR, at 435,626 to 436,675
GFF1787
GFF1788 - Putative 3-oxopropanoate dehydrogenase, at 436,709 to 438,205
GFF1788
GFF1789 - Acyl-CoA dehydrogenase, at 438,291 to 439,460
GFF1789
Position (kb) 436
437
438
439 Strain fitness (log2 ratio) -2
-1
0
1 at 435.924 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.053 kb on + strand, within GFF1787 at 436.368 kb on + strand, within GFF1787 at 436.920 kb on - strand, within GFF1788 at 436.946 kb on + strand, within GFF1788 at 437.108 kb on + strand, within GFF1788 at 437.108 kb on + strand, within GFF1788 at 437.109 kb on - strand, within GFF1788 at 437.402 kb on + strand, within GFF1788 at 437.402 kb on + strand, within GFF1788 at 437.403 kb on - strand, within GFF1788 at 437.403 kb on - strand, within GFF1788 at 437.408 kb on + strand, within GFF1788 at 437.408 kb on + strand, within GFF1788 at 437.408 kb on + strand, within GFF1788 at 437.409 kb on - strand, within GFF1788 at 437.409 kb on - strand, within GFF1788 at 437.409 kb on - strand, within GFF1788 at 437.409 kb on - strand, within GFF1788 at 437.715 kb on - strand, within GFF1788 at 437.798 kb on + strand, within GFF1788 at 437.798 kb on + strand, within GFF1788 at 437.798 kb on + strand, within GFF1788 at 437.798 kb on + strand, within GFF1788 at 437.846 kb on + strand, within GFF1788 at 437.898 kb on - strand, within GFF1788 at 437.898 kb on - strand, within GFF1788 at 437.933 kb on + strand, within GFF1788 at 438.048 kb on - strand, within GFF1788 at 438.122 kb on + strand at 438.122 kb on + strand at 438.273 kb on + strand at 438.273 kb on + strand at 438.273 kb on + strand at 438.273 kb on + strand at 438.273 kb on + strand at 438.273 kb on + strand at 438.273 kb on + strand at 438.273 kb on + strand at 438.274 kb on - strand at 438.274 kb on - strand at 438.274 kb on - strand at 438.393 kb on + strand at 438.475 kb on - strand, within GFF1789 at 438.475 kb on - strand, within GFF1789 at 438.475 kb on - strand, within GFF1789 at 438.570 kb on + strand, within GFF1789 at 438.571 kb on - strand, within GFF1789 at 438.678 kb on + strand, within GFF1789 at 438.679 kb on - strand, within GFF1789 at 438.753 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.807 kb on + strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 438.808 kb on - strand, within GFF1789 at 439.098 kb on + strand, within GFF1789 at 439.099 kb on - strand, within GFF1789 at 439.099 kb on - strand, within GFF1789 at 439.099 kb on - strand, within GFF1789
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 435,924 + GFF1787 0.28 -0.2 436,038 + GFF1787 0.39 +0.1 436,038 + GFF1787 0.39 +0.1 436,038 + GFF1787 0.39 -0.0 436,053 + GFF1787 0.41 -0.7 436,368 + GFF1787 0.71 +0.3 436,920 - GFF1788 0.14 -0.5 436,946 + GFF1788 0.16 -0.7 437,108 + GFF1788 0.27 -0.7 437,108 + GFF1788 0.27 +0.5 437,109 - GFF1788 0.27 +1.7 437,402 + GFF1788 0.46 -0.3 437,402 + GFF1788 0.46 +0.1 437,403 - GFF1788 0.46 +0.2 437,403 - GFF1788 0.46 +0.5 437,408 + GFF1788 0.47 +0.4 437,408 + GFF1788 0.47 +0.2 437,408 + GFF1788 0.47 -0.5 437,409 - GFF1788 0.47 -1.4 437,409 - GFF1788 0.47 +1.4 437,409 - GFF1788 0.47 -0.9 437,409 - GFF1788 0.47 -0.0 437,715 - GFF1788 0.67 -0.3 437,798 + GFF1788 0.73 -0.2 437,798 + GFF1788 0.73 -1.3 437,798 + GFF1788 0.73 +0.6 437,798 + GFF1788 0.73 -0.1 437,846 + GFF1788 0.76 -0.4 437,898 - GFF1788 0.79 -1.2 437,898 - GFF1788 0.79 -0.1 437,933 + GFF1788 0.82 -0.2 438,048 - GFF1788 0.89 -0.1 438,122 + -0.6 438,122 + -0.3 438,273 + +0.3 438,273 + -0.3 438,273 + +0.1 438,273 + -0.9 438,273 + +0.3 438,273 + +0.6 438,273 + +0.4 438,273 + -0.5 438,274 - +0.5 438,274 - -0.1 438,274 - -0.8 438,393 + -0.0 438,475 - GFF1789 0.16 +0.3 438,475 - GFF1789 0.16 +0.5 438,475 - GFF1789 0.16 +0.4 438,570 + GFF1789 0.24 +0.3 438,571 - GFF1789 0.24 -0.4 438,678 + GFF1789 0.33 +0.2 438,679 - GFF1789 0.33 -2.2 438,753 + GFF1789 0.39 -0.7 438,807 + GFF1789 0.44 -0.9 438,807 + GFF1789 0.44 +0.8 438,807 + GFF1789 0.44 +0.2 438,807 + GFF1789 0.44 -0.3 438,807 + GFF1789 0.44 +0.2 438,808 - GFF1789 0.44 +0.5 438,808 - GFF1789 0.44 +0.6 438,808 - GFF1789 0.44 +0.4 438,808 - GFF1789 0.44 +1.7 438,808 - GFF1789 0.44 +0.1 438,808 - GFF1789 0.44 -0.4 439,098 + GFF1789 0.69 -0.2 439,099 - GFF1789 0.69 -0.8 439,099 - GFF1789 0.69 -0.6 439,099 - GFF1789 0.69 -0.4
Or see this region's nucleotide sequence