Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1771 and GFF1772 are separated by 175 nucleotides GFF1772 and GFF1773 are separated by 45 nucleotides GFF1773 and GFF1774 are separated by 3 nucleotides
GFF1771 - hypothetical protein, at 421,924 to 423,912
GFF1771
GFF1772 - RNA 2',3'-cyclic phosphodiesterase, at 424,088 to 424,618
GFF1772
GFF1773 - hypothetical protein, at 424,664 to 425,077
GFF1773
GFF1774 - 2-haloacrylate reductase, at 425,081 to 426,061
GFF1774
Position (kb) 424
425 Strain fitness (log2 ratio) -2
-1
0
1
2 at 424.193 kb on + strand, within GFF1772 at 424.193 kb on + strand, within GFF1772 at 424.193 kb on + strand, within GFF1772 at 424.194 kb on - strand, within GFF1772 at 424.194 kb on - strand, within GFF1772 at 424.433 kb on + strand, within GFF1772 at 424.433 kb on + strand, within GFF1772 at 424.434 kb on - strand, within GFF1772 at 424.824 kb on - strand, within GFF1773 at 424.826 kb on + strand, within GFF1773 at 424.826 kb on + strand, within GFF1773 at 425.009 kb on + strand, within GFF1773 at 425.009 kb on + strand, within GFF1773 at 425.010 kb on - strand, within GFF1773 at 425.208 kb on + strand, within GFF1774 at 425.424 kb on + strand, within GFF1774 at 425.425 kb on - strand, within GFF1774 at 425.537 kb on - strand, within GFF1774
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 424,193 + GFF1772 0.20 +0.4 424,193 + GFF1772 0.20 -1.1 424,193 + GFF1772 0.20 -0.6 424,194 - GFF1772 0.20 -0.7 424,194 - GFF1772 0.20 +0.7 424,433 + GFF1772 0.65 -0.7 424,433 + GFF1772 0.65 -1.7 424,434 - GFF1772 0.65 -0.2 424,824 - GFF1773 0.39 -0.7 424,826 + GFF1773 0.39 -0.7 424,826 + GFF1773 0.39 -0.0 425,009 + GFF1773 0.83 -2.3 425,009 + GFF1773 0.83 +1.2 425,010 - GFF1773 0.84 +0.9 425,208 + GFF1774 0.13 +0.5 425,424 + GFF1774 0.35 +0.7 425,425 - GFF1774 0.35 +1.9 425,537 - GFF1774 0.46 -0.6
Or see this region's nucleotide sequence