Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1739 and GFF1740 are separated by 107 nucleotides GFF1740 and GFF1741 are separated by 287 nucleotides
GFF1739 - Putrescine-binding periplasmic protein SpuD, at 387,323 to 388,429
GFF1739
GFF1740 - Gamma-glutamylputrescine synthetase PuuA, at 388,537 to 389,940
GFF1740
GFF1741 - Adaptive-response sensory-kinase SasA, at 390,228 to 391,745
GFF1741
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.640 kb on - strand, within GFF1739 at 387.705 kb on + strand, within GFF1739 at 387.706 kb on - strand, within GFF1739 at 387.733 kb on + strand, within GFF1739 at 387.733 kb on + strand, within GFF1739 at 387.765 kb on + strand, within GFF1739 at 387.792 kb on + strand, within GFF1739 at 387.890 kb on + strand, within GFF1739 at 387.890 kb on + strand, within GFF1739 at 388.020 kb on + strand, within GFF1739 at 388.047 kb on + strand, within GFF1739 at 388.047 kb on + strand, within GFF1739 at 388.047 kb on + strand, within GFF1739 at 388.047 kb on + strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.113 kb on + strand, within GFF1739 at 388.113 kb on + strand, within GFF1739 at 388.113 kb on + strand, within GFF1739 at 388.113 kb on + strand, within GFF1739 at 388.114 kb on - strand, within GFF1739 at 388.114 kb on - strand, within GFF1739 at 388.114 kb on - strand, within GFF1739 at 388.114 kb on - strand, within GFF1739 at 388.324 kb on + strand at 388.326 kb on + strand at 388.326 kb on + strand at 388.326 kb on + strand at 388.327 kb on - strand at 388.412 kb on + strand at 388.413 kb on - strand at 388.413 kb on - strand at 388.544 kb on + strand at 388.545 kb on - strand at 388.553 kb on + strand at 388.553 kb on + strand at 388.553 kb on + strand at 388.613 kb on + strand at 388.613 kb on + strand at 388.614 kb on - strand at 388.614 kb on - strand at 388.614 kb on - strand at 388.625 kb on + strand at 388.626 kb on - strand at 388.721 kb on + strand, within GFF1740 at 388.721 kb on + strand, within GFF1740 at 388.961 kb on + strand, within GFF1740 at 388.962 kb on - strand, within GFF1740 at 389.200 kb on + strand, within GFF1740 at 389.201 kb on - strand, within GFF1740 at 389.201 kb on - strand, within GFF1740 at 389.240 kb on + strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.832 kb on - strand at 389.852 kb on + strand at 389.853 kb on - strand at 389.864 kb on + strand at 389.865 kb on - strand at 389.943 kb on + strand at 389.944 kb on - strand at 389.944 kb on - strand at 389.944 kb on - strand at 390.019 kb on + strand at 390.019 kb on + strand at 390.019 kb on + strand at 390.019 kb on + strand at 390.020 kb on - strand at 390.505 kb on - strand, within GFF1741 at 390.505 kb on - strand, within GFF1741 at 390.630 kb on + strand, within GFF1741 at 390.630 kb on + strand, within GFF1741
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 387,640 - GFF1739 0.29 -0.2 387,705 + GFF1739 0.35 -0.1 387,706 - GFF1739 0.35 -1.2 387,733 + GFF1739 0.37 -1.0 387,733 + GFF1739 0.37 -0.5 387,765 + GFF1739 0.40 -1.3 387,792 + GFF1739 0.42 +0.0 387,890 + GFF1739 0.51 -0.1 387,890 + GFF1739 0.51 -0.2 388,020 + GFF1739 0.63 +1.2 388,047 + GFF1739 0.65 +0.3 388,047 + GFF1739 0.65 -0.4 388,047 + GFF1739 0.65 +1.4 388,047 + GFF1739 0.65 +1.1 388,048 - GFF1739 0.65 -2.4 388,048 - GFF1739 0.65 -0.1 388,048 - GFF1739 0.65 -1.1 388,048 - GFF1739 0.65 -0.1 388,048 - GFF1739 0.65 +0.5 388,048 - GFF1739 0.65 -0.0 388,113 + GFF1739 0.71 +0.2 388,113 + GFF1739 0.71 -0.3 388,113 + GFF1739 0.71 +1.2 388,113 + GFF1739 0.71 +0.2 388,114 - GFF1739 0.71 +0.0 388,114 - GFF1739 0.71 -1.2 388,114 - GFF1739 0.71 +0.3 388,114 - GFF1739 0.71 +0.2 388,324 + -0.4 388,326 + -0.8 388,326 + -0.9 388,326 + -0.4 388,327 - +0.2 388,412 + -0.1 388,413 - +0.5 388,413 - +1.1 388,544 + -1.6 388,545 - -0.2 388,553 + +0.8 388,553 + -0.8 388,553 + -1.2 388,613 + -0.7 388,613 + +0.6 388,614 - -1.4 388,614 - -0.3 388,614 - -0.3 388,625 + -0.2 388,626 - +1.7 388,721 + GFF1740 0.13 -0.9 388,721 + GFF1740 0.13 -1.1 388,961 + GFF1740 0.30 +0.5 388,962 - GFF1740 0.30 +0.6 389,200 + GFF1740 0.47 +0.4 389,201 - GFF1740 0.47 +1.7 389,201 - GFF1740 0.47 +0.8 389,240 + GFF1740 0.50 -0.2 389,370 - GFF1740 0.59 -0.5 389,370 - GFF1740 0.59 -2.3 389,370 - GFF1740 0.59 +2.1 389,370 - GFF1740 0.59 +1.9 389,370 - GFF1740 0.59 +1.2 389,370 - GFF1740 0.59 +0.2 389,832 - -0.1 389,852 + -0.8 389,853 - -1.0 389,864 + +1.6 389,865 - -0.5 389,943 + +1.5 389,944 - -0.6 389,944 - +0.5 389,944 - -0.2 390,019 + -0.2 390,019 + +0.1 390,019 + -0.6 390,019 + -0.0 390,020 - +0.5 390,505 - GFF1741 0.18 +0.6 390,505 - GFF1741 0.18 -1.5 390,630 + GFF1741 0.26 -0.9 390,630 + GFF1741 0.26 -0.6
Or see this region's nucleotide sequence