Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1727 and GFF1728 overlap by 1 nucleotides GFF1728 and GFF1729 are separated by 107 nucleotides GFF1729 and GFF1730 are separated by 145 nucleotides GFF1730 and GFF1731 are separated by 5 nucleotides GFF1731 and GFF1732 overlap by 4 nucleotides
GFF1727 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B, at 376,294 to 376,938
GFF1727
GFF1728 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 376,938 to 377,651
GFF1728
GFF1729 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 377,759 to 378,526
GFF1729
GFF1730 - Molybdopterin synthase catalytic subunit, at 378,672 to 379,142
GFF1730
GFF1731 - Molybdopterin synthase sulfur carrier subunit, at 379,148 to 379,399
GFF1731
GFF1732 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 379,396 to 380,076
GFF1732
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1 at 376.767 kb on - strand, within GFF1727 at 376.877 kb on + strand at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.020 kb on + strand, within GFF1728 at 377.021 kb on - strand, within GFF1728 at 377.021 kb on - strand, within GFF1728 at 377.147 kb on - strand, within GFF1728 at 377.224 kb on + strand, within GFF1728 at 377.224 kb on + strand, within GFF1728 at 377.225 kb on - strand, within GFF1728 at 377.225 kb on - strand, within GFF1728 at 377.293 kb on + strand, within GFF1728 at 377.417 kb on - strand, within GFF1728 at 377.636 kb on - strand at 377.698 kb on + strand at 377.771 kb on + strand at 377.772 kb on - strand at 377.814 kb on + strand at 377.815 kb on - strand at 377.955 kb on + strand, within GFF1729 at 378.051 kb on + strand, within GFF1729 at 378.052 kb on - strand, within GFF1729 at 378.456 kb on + strand at 378.457 kb on - strand at 378.464 kb on + strand at 378.645 kb on + strand at 378.646 kb on - strand at 378.976 kb on + strand, within GFF1730 at 379.266 kb on + strand, within GFF1731
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 376,767 - GFF1727 0.73 -1.5 376,877 + +0.2 377,020 + GFF1728 0.11 +1.5 377,020 + GFF1728 0.11 -0.1 377,020 + GFF1728 0.11 -1.3 377,020 + GFF1728 0.11 -0.7 377,020 + GFF1728 0.11 +0.1 377,021 - GFF1728 0.12 -1.4 377,021 - GFF1728 0.12 -0.1 377,147 - GFF1728 0.29 +0.7 377,224 + GFF1728 0.40 -0.1 377,224 + GFF1728 0.40 -0.9 377,225 - GFF1728 0.40 +0.6 377,225 - GFF1728 0.40 -0.6 377,293 + GFF1728 0.50 -0.8 377,417 - GFF1728 0.67 +1.3 377,636 - +0.3 377,698 + +0.9 377,771 + -0.5 377,772 - -2.2 377,814 + +0.2 377,815 - -0.3 377,955 + GFF1729 0.26 -2.2 378,051 + GFF1729 0.38 -1.1 378,052 - GFF1729 0.38 +0.1 378,456 + -1.2 378,457 - +0.8 378,464 + -1.7 378,645 + -2.7 378,646 - +0.1 378,976 + GFF1730 0.65 -1.6 379,266 + GFF1731 0.47 -1.9
Or see this region's nucleotide sequence