Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1715 and GFF1716 are separated by 24 nucleotides GFF1716 and GFF1717 are separated by 72 nucleotides GFF1717 and GFF1718 are separated by 12 nucleotides
GFF1715 - hypothetical protein, at 362,545 to 362,922
GFF1715
GFF1716 - hypothetical protein, at 362,947 to 363,354
GFF1716
GFF1717 - multidrug efflux RND transporter permease subunit OqxB9, at 363,427 to 366,606
GFF1717
GFF1718 - Efflux pump periplasmic linker BepF, at 366,619 to 367,845
GFF1718
Position (kb) 363
364
365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 362.459 kb on + strand at 362.558 kb on + strand at 362.746 kb on + strand, within GFF1715 at 362.746 kb on + strand, within GFF1715 at 362.746 kb on + strand, within GFF1715 at 362.861 kb on - strand, within GFF1715 at 363.028 kb on + strand, within GFF1716 at 363.031 kb on + strand, within GFF1716 at 363.031 kb on + strand, within GFF1716 at 363.289 kb on + strand, within GFF1716 at 363.513 kb on - strand at 363.529 kb on + strand at 363.911 kb on + strand, within GFF1717 at 363.911 kb on + strand, within GFF1717 at 363.911 kb on + strand, within GFF1717 at 363.912 kb on - strand, within GFF1717 at 363.996 kb on - strand, within GFF1717 at 364.016 kb on + strand, within GFF1717 at 364.017 kb on - strand, within GFF1717 at 364.133 kb on + strand, within GFF1717 at 364.316 kb on + strand, within GFF1717 at 364.317 kb on - strand, within GFF1717 at 364.317 kb on - strand, within GFF1717 at 364.331 kb on + strand, within GFF1717 at 364.332 kb on - strand, within GFF1717 at 364.332 kb on - strand, within GFF1717 at 364.439 kb on + strand, within GFF1717 at 364.439 kb on + strand, within GFF1717 at 364.440 kb on - strand, within GFF1717 at 364.487 kb on + strand, within GFF1717 at 364.487 kb on + strand, within GFF1717 at 364.488 kb on - strand, within GFF1717 at 364.955 kb on + strand, within GFF1717 at 364.956 kb on - strand, within GFF1717 at 364.956 kb on - strand, within GFF1717 at 365.010 kb on - strand, within GFF1717 at 365.075 kb on + strand, within GFF1717 at 365.075 kb on + strand, within GFF1717 at 365.075 kb on + strand, within GFF1717 at 365.205 kb on - strand, within GFF1717 at 365.309 kb on + strand, within GFF1717 at 365.310 kb on - strand, within GFF1717 at 365.621 kb on + strand, within GFF1717 at 365.621 kb on + strand, within GFF1717 at 365.625 kb on - strand, within GFF1717 at 365.777 kb on + strand, within GFF1717 at 365.777 kb on + strand, within GFF1717 at 365.896 kb on + strand, within GFF1717 at 365.897 kb on - strand, within GFF1717 at 366.371 kb on + strand at 366.371 kb on + strand at 366.371 kb on + strand at 366.372 kb on - strand at 366.372 kb on - strand at 366.522 kb on - strand at 366.522 kb on - strand at 366.848 kb on + strand, within GFF1718 at 366.848 kb on + strand, within GFF1718 at 366.848 kb on + strand, within GFF1718 at 366.849 kb on - strand, within GFF1718 at 366.909 kb on - strand, within GFF1718 at 367.233 kb on - strand, within GFF1718 at 367.432 kb on - strand, within GFF1718
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 362,459 + -0.1 362,558 + -0.5 362,746 + GFF1715 0.53 -0.9 362,746 + GFF1715 0.53 -0.3 362,746 + GFF1715 0.53 -0.1 362,861 - GFF1715 0.84 -0.1 363,028 + GFF1716 0.20 -1.2 363,031 + GFF1716 0.21 -0.4 363,031 + GFF1716 0.21 +0.6 363,289 + GFF1716 0.84 -2.8 363,513 - -0.3 363,529 + +2.8 363,911 + GFF1717 0.15 -1.2 363,911 + GFF1717 0.15 -0.5 363,911 + GFF1717 0.15 -0.5 363,912 - GFF1717 0.15 -0.3 363,996 - GFF1717 0.18 -1.4 364,016 + GFF1717 0.19 +1.1 364,017 - GFF1717 0.19 -1.0 364,133 + GFF1717 0.22 +0.8 364,316 + GFF1717 0.28 +0.0 364,317 - GFF1717 0.28 +0.1 364,317 - GFF1717 0.28 -0.2 364,331 + GFF1717 0.28 -0.1 364,332 - GFF1717 0.28 -0.0 364,332 - GFF1717 0.28 +1.3 364,439 + GFF1717 0.32 +0.1 364,439 + GFF1717 0.32 +0.1 364,440 - GFF1717 0.32 +0.1 364,487 + GFF1717 0.33 -0.1 364,487 + GFF1717 0.33 -0.9 364,488 - GFF1717 0.33 -1.3 364,955 + GFF1717 0.48 -0.7 364,956 - GFF1717 0.48 -0.4 364,956 - GFF1717 0.48 -0.3 365,010 - GFF1717 0.50 -1.0 365,075 + GFF1717 0.52 +0.1 365,075 + GFF1717 0.52 -0.1 365,075 + GFF1717 0.52 -2.0 365,205 - GFF1717 0.56 -0.0 365,309 + GFF1717 0.59 -0.6 365,310 - GFF1717 0.59 -0.2 365,621 + GFF1717 0.69 +0.6 365,621 + GFF1717 0.69 -0.9 365,625 - GFF1717 0.69 -0.1 365,777 + GFF1717 0.74 -1.1 365,777 + GFF1717 0.74 +0.6 365,896 + GFF1717 0.78 -0.0 365,897 - GFF1717 0.78 +0.8 366,371 + -1.7 366,371 + +1.1 366,371 + -0.4 366,372 - +0.6 366,372 - +0.5 366,522 - +0.8 366,522 - +1.3 366,848 + GFF1718 0.19 +1.3 366,848 + GFF1718 0.19 -1.4 366,848 + GFF1718 0.19 +0.3 366,849 - GFF1718 0.19 -1.2 366,909 - GFF1718 0.24 -1.7 367,233 - GFF1718 0.50 -0.1 367,432 - GFF1718 0.66 -0.4
Or see this region's nucleotide sequence