Strain Fitness in Xanthobacter sp. DMC5 around GFF1659

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1658 and GFF1659 are separated by 95 nucleotidesGFF1659 and GFF1660 are separated by 77 nucleotides GFF1658 - Aspartate kinase, at 311,053 to 312,312 GFF1658 GFF1659 - Phosphoenolpyruvate-dependent phosphotransferase system, at 312,408 to 314,675 GFF1659 GFF1660 - Peptide chain release factor RF1, at 314,753 to 315,835 GFF1660 Position (kb) 312 313 314 315Strain fitness (log2 ratio) -2 -1 0 1at 312.549 kb on + strandat 312.744 kb on + strand, within GFF1659at 312.744 kb on + strand, within GFF1659at 312.828 kb on + strand, within GFF1659at 312.828 kb on + strand, within GFF1659at 312.828 kb on + strand, within GFF1659at 312.828 kb on + strand, within GFF1659at 312.830 kb on + strand, within GFF1659at 314.214 kb on + strand, within GFF1659at 314.214 kb on + strand, within GFF1659at 314.752 kb on + strandat 314.752 kb on + strandat 314.752 kb on + strandat 314.752 kb on + strandat 314.752 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
312,549 + -1.4
312,744 + GFF1659 0.15 -1.5
312,744 + GFF1659 0.15 -0.9
312,828 + GFF1659 0.19 +0.3
312,828 + GFF1659 0.19 -2.4
312,828 + GFF1659 0.19 -0.5
312,828 + GFF1659 0.19 -2.1
312,830 + GFF1659 0.19 +0.5
314,214 + GFF1659 0.80 +0.5
314,214 + GFF1659 0.80 +0.1
314,752 + -0.7
314,752 + +0.7
314,752 + -0.4
314,752 + +0.8
314,752 + -0.7

Or see this region's nucleotide sequence