Strain Fitness in Xanthobacter sp. DMC5 around GFF1625

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1623 and GFF1624 are separated by 64 nucleotidesGFF1624 and GFF1625 are separated by 416 nucleotidesGFF1625 and GFF1626 are separated by 36 nucleotides GFF1623 - hypothetical protein, at 273,452 to 273,706 GFF1623 GFF1624 - hypothetical protein, at 273,771 to 274,070 GFF1624 GFF1625 - hypothetical protein, at 274,487 to 275,074 GFF1625 GFF1626 - hypothetical protein, at 275,111 to 275,653 GFF1626 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.625 kb on - strand, within GFF1623at 273.625 kb on - strand, within GFF1623at 273.625 kb on - strand, within GFF1623at 273.625 kb on - strand, within GFF1623at 273.647 kb on + strand, within GFF1623at 273.647 kb on + strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.746 kb on + strandat 273.746 kb on + strandat 273.747 kb on - strandat 273.798 kb on - strandat 273.840 kb on + strand, within GFF1624at 273.840 kb on + strand, within GFF1624at 273.841 kb on - strand, within GFF1624at 273.841 kb on - strand, within GFF1624at 273.841 kb on - strand, within GFF1624at 273.943 kb on + strand, within GFF1624at 273.943 kb on + strand, within GFF1624at 273.943 kb on + strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 274.004 kb on + strand, within GFF1624at 274.004 kb on + strand, within GFF1624at 274.053 kb on - strandat 274.053 kb on - strandat 274.073 kb on + strandat 274.073 kb on + strandat 274.073 kb on + strandat 274.074 kb on - strandat 274.074 kb on - strandat 274.074 kb on - strandat 274.074 kb on - strandat 274.074 kb on - strandat 274.641 kb on - strand, within GFF1625at 274.641 kb on - strand, within GFF1625at 274.641 kb on - strand, within GFF1625at 274.730 kb on + strand, within GFF1625at 274.731 kb on - strand, within GFF1625at 274.789 kb on - strand, within GFF1625at 274.789 kb on - strand, within GFF1625at 274.856 kb on + strand, within GFF1625at 274.856 kb on + strand, within GFF1625at 274.857 kb on - strand, within GFF1625at 274.857 kb on - strand, within GFF1625at 274.857 kb on - strand, within GFF1625at 274.883 kb on + strand, within GFF1625at 274.883 kb on + strand, within GFF1625at 274.948 kb on + strand, within GFF1625at 275.031 kb on + strandat 275.072 kb on + strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.075 kb on + strandat 275.137 kb on - strandat 275.257 kb on + strand, within GFF1626at 275.278 kb on + strand, within GFF1626at 275.279 kb on - strand, within GFF1626at 275.298 kb on - strand, within GFF1626at 275.369 kb on + strand, within GFF1626at 275.369 kb on + strand, within GFF1626at 275.370 kb on - strand, within GFF1626at 275.370 kb on - strand, within GFF1626at 275.370 kb on - strand, within GFF1626at 275.370 kb on - strand, within GFF1626at 275.418 kb on + strand, within GFF1626at 275.419 kb on - strand, within GFF1626at 275.419 kb on - strand, within GFF1626at 275.482 kb on + strand, within GFF1626at 275.483 kb on - strand, within GFF1626at 275.627 kb on - strandat 275.627 kb on - strandat 275.832 kb on - strandat 276.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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273,624 + GFF1623 0.67 +0.5
273,624 + GFF1623 0.67 -0.2
273,624 + GFF1623 0.67 +1.8
273,624 + GFF1623 0.67 -0.6
273,624 + GFF1623 0.67 +0.7
273,624 + GFF1623 0.67 +0.3
273,624 + GFF1623 0.67 -0.2
273,625 - GFF1623 0.68 +0.2
273,625 - GFF1623 0.68 +0.6
273,625 - GFF1623 0.68 -0.3
273,625 - GFF1623 0.68 +0.7
273,647 + GFF1623 0.76 -0.5
273,647 + GFF1623 0.76 -0.3
273,648 - GFF1623 0.77 -0.3
273,648 - GFF1623 0.77 -1.3
273,648 - GFF1623 0.77 +0.3
273,648 - GFF1623 0.77 +0.8
273,648 - GFF1623 0.77 +0.6
273,746 + -0.2
273,746 + -0.5
273,747 - +0.6
273,798 - -0.6
273,840 + GFF1624 0.23 +0.3
273,840 + GFF1624 0.23 +0.5
273,841 - GFF1624 0.23 +0.3
273,841 - GFF1624 0.23 +1.1
273,841 - GFF1624 0.23 -1.6
273,943 + GFF1624 0.57 +0.1
273,943 + GFF1624 0.57 +1.1
273,943 + GFF1624 0.57 -0.0
273,944 - GFF1624 0.58 -2.2
273,944 - GFF1624 0.58 -0.2
273,944 - GFF1624 0.58 +0.4
273,944 - GFF1624 0.58 -1.1
273,944 - GFF1624 0.58 -0.8
273,944 - GFF1624 0.58 -0.9
273,944 - GFF1624 0.58 +0.5
273,944 - GFF1624 0.58 +0.5
274,004 + GFF1624 0.78 +0.6
274,004 + GFF1624 0.78 -0.1
274,053 - +0.0
274,053 - -0.0
274,073 + -0.9
274,073 + -0.3
274,073 + +0.0
274,074 - +1.3
274,074 - -0.4
274,074 - +0.1
274,074 - +0.2
274,074 - +0.6
274,641 - GFF1625 0.26 +0.8
274,641 - GFF1625 0.26 +0.7
274,641 - GFF1625 0.26 -0.1
274,730 + GFF1625 0.41 -1.2
274,731 - GFF1625 0.41 -0.0
274,789 - GFF1625 0.51 +0.2
274,789 - GFF1625 0.51 -0.5
274,856 + GFF1625 0.63 -0.5
274,856 + GFF1625 0.63 +0.9
274,857 - GFF1625 0.63 -0.4
274,857 - GFF1625 0.63 +0.2
274,857 - GFF1625 0.63 -0.6
274,883 + GFF1625 0.67 +0.2
274,883 + GFF1625 0.67 +2.5
274,948 + GFF1625 0.78 +0.8
275,031 + +1.3
275,072 + +0.5
275,073 - +0.1
275,073 - -0.5
275,073 - +0.4
275,075 + +1.8
275,137 - -0.2
275,257 + GFF1626 0.27 +0.4
275,278 + GFF1626 0.31 -0.1
275,279 - GFF1626 0.31 +1.1
275,298 - GFF1626 0.34 +0.0
275,369 + GFF1626 0.48 +0.4
275,369 + GFF1626 0.48 -0.6
275,370 - GFF1626 0.48 -0.1
275,370 - GFF1626 0.48 +1.3
275,370 - GFF1626 0.48 +0.2
275,370 - GFF1626 0.48 -1.2
275,418 + GFF1626 0.57 +0.6
275,419 - GFF1626 0.57 +1.9
275,419 - GFF1626 0.57 -0.1
275,482 + GFF1626 0.68 +0.4
275,483 - GFF1626 0.69 -0.2
275,627 - +0.5
275,627 - -0.6
275,832 - +0.7
276,061 + +0.3

Or see this region's nucleotide sequence