Strain Fitness in Xanthobacter sp. DMC5 around GFF1622

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1621 and GFF1622 are separated by 12 nucleotidesGFF1622 and GFF1623 are separated by 141 nucleotidesGFF1623 and GFF1624 are separated by 64 nucleotides GFF1621 - hypothetical protein, at 269,774 to 271,744 GFF1621 GFF1622 - hypothetical protein, at 271,757 to 273,310 GFF1622 GFF1623 - hypothetical protein, at 273,452 to 273,706 GFF1623 GFF1624 - hypothetical protein, at 273,771 to 274,070 GFF1624 Position (kb) 271 272 273 274Strain fitness (log2 ratio) -2 -1 0 1 2at 270.785 kb on + strand, within GFF1621at 270.786 kb on - strand, within GFF1621at 270.803 kb on + strand, within GFF1621at 270.803 kb on + strand, within GFF1621at 270.805 kb on + strand, within GFF1621at 270.805 kb on + strand, within GFF1621at 270.806 kb on - strand, within GFF1621at 270.806 kb on - strand, within GFF1621at 270.806 kb on - strand, within GFF1621at 270.806 kb on - strand, within GFF1621at 270.912 kb on - strand, within GFF1621at 270.912 kb on - strand, within GFF1621at 270.984 kb on + strand, within GFF1621at 271.052 kb on + strand, within GFF1621at 271.199 kb on + strand, within GFF1621at 271.200 kb on - strand, within GFF1621at 271.200 kb on - strand, within GFF1621at 271.200 kb on - strand, within GFF1621at 271.200 kb on - strand, within GFF1621at 271.200 kb on - strand, within GFF1621at 271.202 kb on - strand, within GFF1621at 271.202 kb on - strand, within GFF1621at 271.202 kb on - strand, within GFF1621at 271.208 kb on - strand, within GFF1621at 271.359 kb on - strand, within GFF1621at 271.361 kb on - strand, within GFF1621at 271.394 kb on - strand, within GFF1621at 271.400 kb on + strand, within GFF1621at 271.442 kb on - strand, within GFF1621at 271.535 kb on + strand, within GFF1621at 271.536 kb on - strand, within GFF1621at 271.536 kb on - strand, within GFF1621at 271.536 kb on - strand, within GFF1621at 271.576 kb on + strandat 271.577 kb on - strandat 271.690 kb on + strandat 271.690 kb on + strandat 271.690 kb on + strandat 271.691 kb on - strandat 271.691 kb on - strandat 271.691 kb on - strandat 271.691 kb on - strandat 271.691 kb on - strandat 271.691 kb on - strandat 271.812 kb on - strandat 271.843 kb on + strandat 271.844 kb on - strandat 271.920 kb on + strand, within GFF1622at 271.921 kb on - strand, within GFF1622at 271.993 kb on + strand, within GFF1622at 271.993 kb on + strand, within GFF1622at 271.993 kb on + strand, within GFF1622at 272.049 kb on + strand, within GFF1622at 272.068 kb on - strand, within GFF1622at 272.094 kb on + strand, within GFF1622at 272.094 kb on + strand, within GFF1622at 272.095 kb on - strand, within GFF1622at 272.095 kb on - strand, within GFF1622at 272.129 kb on - strand, within GFF1622at 272.129 kb on - strand, within GFF1622at 272.148 kb on - strand, within GFF1622at 272.218 kb on + strand, within GFF1622at 272.270 kb on - strand, within GFF1622at 272.304 kb on + strand, within GFF1622at 272.312 kb on + strand, within GFF1622at 272.343 kb on - strand, within GFF1622at 272.343 kb on - strand, within GFF1622at 272.364 kb on + strand, within GFF1622at 272.365 kb on - strand, within GFF1622at 272.419 kb on - strand, within GFF1622at 272.428 kb on - strand, within GFF1622at 272.431 kb on - strand, within GFF1622at 272.572 kb on - strand, within GFF1622at 272.572 kb on - strand, within GFF1622at 272.572 kb on - strand, within GFF1622at 272.572 kb on - strand, within GFF1622at 272.584 kb on - strand, within GFF1622at 272.657 kb on - strand, within GFF1622at 272.664 kb on + strand, within GFF1622at 272.664 kb on + strand, within GFF1622at 272.668 kb on + strand, within GFF1622at 272.668 kb on + strand, within GFF1622at 272.669 kb on - strand, within GFF1622at 272.669 kb on - strand, within GFF1622at 272.669 kb on - strand, within GFF1622at 272.675 kb on - strand, within GFF1622at 272.725 kb on + strand, within GFF1622at 272.726 kb on - strand, within GFF1622at 272.732 kb on + strand, within GFF1622at 272.803 kb on + strand, within GFF1622at 272.821 kb on + strand, within GFF1622at 272.958 kb on - strand, within GFF1622at 272.958 kb on - strand, within GFF1622at 272.958 kb on - strand, within GFF1622at 272.958 kb on - strand, within GFF1622at 272.961 kb on + strand, within GFF1622at 272.961 kb on + strand, within GFF1622at 272.962 kb on - strand, within GFF1622at 273.055 kb on - strand, within GFF1622at 273.069 kb on + strand, within GFF1622at 273.069 kb on + strand, within GFF1622at 273.070 kb on - strand, within GFF1622at 273.093 kb on + strand, within GFF1622at 273.094 kb on - strand, within GFF1622at 273.183 kb on + strandat 273.189 kb on - strandat 273.235 kb on + strandat 273.235 kb on + strandat 273.235 kb on + strandat 273.270 kb on + strandat 273.308 kb on + strandat 273.322 kb on - strandat 273.322 kb on - strandat 273.322 kb on - strandat 273.337 kb on + strandat 273.337 kb on + strandat 273.337 kb on + strandat 273.338 kb on - strandat 273.338 kb on - strandat 273.338 kb on - strandat 273.338 kb on - strandat 273.413 kb on + strandat 273.413 kb on + strandat 273.413 kb on + strandat 273.413 kb on + strandat 273.414 kb on - strandat 273.414 kb on - strandat 273.414 kb on - strandat 273.446 kb on + strandat 273.446 kb on + strandat 273.447 kb on - strandat 273.447 kb on - strandat 273.447 kb on - strandat 273.447 kb on - strandat 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.624 kb on + strand, within GFF1623at 273.625 kb on - strand, within GFF1623at 273.625 kb on - strand, within GFF1623at 273.625 kb on - strand, within GFF1623at 273.625 kb on - strand, within GFF1623at 273.647 kb on + strand, within GFF1623at 273.647 kb on + strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.648 kb on - strand, within GFF1623at 273.746 kb on + strandat 273.746 kb on + strandat 273.747 kb on - strandat 273.798 kb on - strandat 273.840 kb on + strand, within GFF1624at 273.840 kb on + strand, within GFF1624at 273.841 kb on - strand, within GFF1624at 273.841 kb on - strand, within GFF1624at 273.841 kb on - strand, within GFF1624at 273.943 kb on + strand, within GFF1624at 273.943 kb on + strand, within GFF1624at 273.943 kb on + strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 273.944 kb on - strand, within GFF1624at 274.004 kb on + strand, within GFF1624at 274.004 kb on + strand, within GFF1624at 274.053 kb on - strandat 274.053 kb on - strandat 274.073 kb on + strandat 274.073 kb on + strandat 274.073 kb on + strandat 274.074 kb on - strandat 274.074 kb on - strandat 274.074 kb on - strandat 274.074 kb on - strandat 274.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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270,785 + GFF1621 0.51 +0.3
270,786 - GFF1621 0.51 -1.8
270,803 + GFF1621 0.52 -1.3
270,803 + GFF1621 0.52 +0.3
270,805 + GFF1621 0.52 -0.0
270,805 + GFF1621 0.52 -0.0
270,806 - GFF1621 0.52 -1.3
270,806 - GFF1621 0.52 +0.9
270,806 - GFF1621 0.52 +0.8
270,806 - GFF1621 0.52 -1.3
270,912 - GFF1621 0.58 -0.4
270,912 - GFF1621 0.58 +0.7
270,984 + GFF1621 0.61 -0.1
271,052 + GFF1621 0.65 -0.5
271,199 + GFF1621 0.72 -0.1
271,200 - GFF1621 0.72 +0.5
271,200 - GFF1621 0.72 -0.2
271,200 - GFF1621 0.72 +0.1
271,200 - GFF1621 0.72 -1.3
271,200 - GFF1621 0.72 -0.3
271,202 - GFF1621 0.72 -0.4
271,202 - GFF1621 0.72 -0.8
271,202 - GFF1621 0.72 +0.7
271,208 - GFF1621 0.73 +0.0
271,359 - GFF1621 0.80 +1.3
271,361 - GFF1621 0.81 +0.7
271,394 - GFF1621 0.82 +0.7
271,400 + GFF1621 0.82 +0.1
271,442 - GFF1621 0.85 +0.2
271,535 + GFF1621 0.89 +0.7
271,536 - GFF1621 0.89 +0.4
271,536 - GFF1621 0.89 -1.1
271,536 - GFF1621 0.89 -0.7
271,576 + +0.3
271,577 - -0.4
271,690 + +0.6
271,690 + +0.2
271,690 + -0.5
271,691 - +0.3
271,691 - +0.6
271,691 - +1.7
271,691 - -1.1
271,691 - +0.2
271,691 - +0.3
271,812 - +0.1
271,843 + -1.5
271,844 - -0.5
271,920 + GFF1622 0.10 -0.3
271,921 - GFF1622 0.11 +1.0
271,993 + GFF1622 0.15 -0.2
271,993 + GFF1622 0.15 +0.7
271,993 + GFF1622 0.15 -0.7
272,049 + GFF1622 0.19 -0.5
272,068 - GFF1622 0.20 +0.4
272,094 + GFF1622 0.22 +0.0
272,094 + GFF1622 0.22 +1.2
272,095 - GFF1622 0.22 +1.3
272,095 - GFF1622 0.22 +1.7
272,129 - GFF1622 0.24 -0.8
272,129 - GFF1622 0.24 -0.3
272,148 - GFF1622 0.25 -0.4
272,218 + GFF1622 0.30 +0.7
272,270 - GFF1622 0.33 -0.7
272,304 + GFF1622 0.35 -0.7
272,312 + GFF1622 0.36 -0.4
272,343 - GFF1622 0.38 +0.2
272,343 - GFF1622 0.38 +0.0
272,364 + GFF1622 0.39 -0.2
272,365 - GFF1622 0.39 -0.5
272,419 - GFF1622 0.43 +0.8
272,428 - GFF1622 0.43 +0.5
272,431 - GFF1622 0.43 +0.4
272,572 - GFF1622 0.52 -0.8
272,572 - GFF1622 0.52 -1.7
272,572 - GFF1622 0.52 -0.5
272,572 - GFF1622 0.52 +0.2
272,584 - GFF1622 0.53 -0.1
272,657 - GFF1622 0.58 -0.4
272,664 + GFF1622 0.58 +0.5
272,664 + GFF1622 0.58 +0.0
272,668 + GFF1622 0.59 -0.3
272,668 + GFF1622 0.59 -0.8
272,669 - GFF1622 0.59 +0.2
272,669 - GFF1622 0.59 -0.6
272,669 - GFF1622 0.59 +0.1
272,675 - GFF1622 0.59 +0.8
272,725 + GFF1622 0.62 -0.4
272,726 - GFF1622 0.62 +0.8
272,732 + GFF1622 0.63 +0.1
272,803 + GFF1622 0.67 -0.1
272,821 + GFF1622 0.68 -0.2
272,958 - GFF1622 0.77 +0.4
272,958 - GFF1622 0.77 -0.1
272,958 - GFF1622 0.77 -2.3
272,958 - GFF1622 0.77 +0.6
272,961 + GFF1622 0.77 -0.1
272,961 + GFF1622 0.77 +0.4
272,962 - GFF1622 0.78 +0.9
273,055 - GFF1622 0.84 +0.4
273,069 + GFF1622 0.84 -0.4
273,069 + GFF1622 0.84 -0.5
273,070 - GFF1622 0.84 +0.1
273,093 + GFF1622 0.86 +1.2
273,094 - GFF1622 0.86 -0.3
273,183 + -0.9
273,189 - +2.1
273,235 + +0.5
273,235 + +0.3
273,235 + -0.4
273,270 + -0.2
273,308 + -0.5
273,322 - -0.1
273,322 - -0.0
273,322 - -1.4
273,337 + +0.1
273,337 + -0.2
273,337 + +0.4
273,338 - +0.1
273,338 - -0.5
273,338 - -0.5
273,338 - -0.2
273,413 + -1.0
273,413 + -0.6
273,413 + +0.6
273,413 + -0.5
273,414 - +0.4
273,414 - -0.5
273,414 - +0.7
273,446 + -1.4
273,446 + +0.1
273,447 - -2.0
273,447 - -1.0
273,447 - +0.1
273,447 - +0.2
273,624 + GFF1623 0.67 +0.5
273,624 + GFF1623 0.67 -0.2
273,624 + GFF1623 0.67 +1.8
273,624 + GFF1623 0.67 -0.6
273,624 + GFF1623 0.67 +0.7
273,624 + GFF1623 0.67 +0.3
273,624 + GFF1623 0.67 -0.2
273,625 - GFF1623 0.68 +0.2
273,625 - GFF1623 0.68 +0.6
273,625 - GFF1623 0.68 -0.3
273,625 - GFF1623 0.68 +0.7
273,647 + GFF1623 0.76 -0.5
273,647 + GFF1623 0.76 -0.3
273,648 - GFF1623 0.77 -0.3
273,648 - GFF1623 0.77 -1.3
273,648 - GFF1623 0.77 +0.3
273,648 - GFF1623 0.77 +0.8
273,648 - GFF1623 0.77 +0.6
273,746 + -0.2
273,746 + -0.5
273,747 - +0.6
273,798 - -0.6
273,840 + GFF1624 0.23 +0.3
273,840 + GFF1624 0.23 +0.5
273,841 - GFF1624 0.23 +0.3
273,841 - GFF1624 0.23 +1.1
273,841 - GFF1624 0.23 -1.6
273,943 + GFF1624 0.57 +0.1
273,943 + GFF1624 0.57 +1.1
273,943 + GFF1624 0.57 -0.0
273,944 - GFF1624 0.58 -2.2
273,944 - GFF1624 0.58 -0.2
273,944 - GFF1624 0.58 +0.4
273,944 - GFF1624 0.58 -1.1
273,944 - GFF1624 0.58 -0.8
273,944 - GFF1624 0.58 -0.9
273,944 - GFF1624 0.58 +0.5
273,944 - GFF1624 0.58 +0.5
274,004 + GFF1624 0.78 +0.6
274,004 + GFF1624 0.78 -0.1
274,053 - +0.0
274,053 - -0.0
274,073 + -0.9
274,073 + -0.3
274,073 + +0.0
274,074 - +1.3
274,074 - -0.4
274,074 - +0.1
274,074 - +0.2
274,074 - +0.6

Or see this region's nucleotide sequence