Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1615 and GFF1616 overlap by 4 nucleotides GFF1616 and GFF1617 are separated by 68 nucleotides GFF1617 and GFF1618 are separated by 138 nucleotides GFF1618 and GFF1619 are separated by 449 nucleotides
GFF1615 - hypothetical protein, at 264,831 to 265,307
GFF1615
GFF1616 - hypothetical protein, at 265,304 to 265,453
GFF1616
GFF1617 - hypothetical protein, at 265,522 to 265,764
GFF1617
GFF1618 - hypothetical protein, at 265,903 to 266,676
GFF1618
GFF1619 - hypothetical protein, at 267,126 to 268,499
GFF1619
Position (kb) 265
266
267 Strain fitness (log2 ratio) -1
0
1
2 at 264.940 kb on + strand, within GFF1615 at 265.200 kb on + strand, within GFF1615 at 265.212 kb on + strand, within GFF1615 at 265.212 kb on + strand, within GFF1615 at 265.213 kb on - strand, within GFF1615 at 265.255 kb on + strand, within GFF1615 at 265.255 kb on + strand, within GFF1615 at 265.256 kb on - strand, within GFF1615 at 265.292 kb on + strand at 265.293 kb on - strand at 265.490 kb on + strand at 265.490 kb on + strand at 265.490 kb on + strand at 265.490 kb on + strand at 265.762 kb on + strand at 265.762 kb on + strand at 265.763 kb on - strand at 265.763 kb on - strand at 265.839 kb on - strand at 266.039 kb on + strand, within GFF1618 at 266.040 kb on - strand, within GFF1618 at 266.040 kb on - strand, within GFF1618 at 266.040 kb on - strand, within GFF1618 at 266.040 kb on - strand, within GFF1618 at 266.064 kb on - strand, within GFF1618 at 266.064 kb on - strand, within GFF1618 at 266.117 kb on - strand, within GFF1618 at 266.117 kb on - strand, within GFF1618 at 266.117 kb on - strand, within GFF1618 at 266.224 kb on + strand, within GFF1618 at 266.225 kb on - strand, within GFF1618 at 266.225 kb on - strand, within GFF1618 at 266.225 kb on - strand, within GFF1618 at 266.231 kb on - strand, within GFF1618 at 266.271 kb on - strand, within GFF1618 at 266.271 kb on - strand, within GFF1618 at 266.332 kb on + strand, within GFF1618 at 266.335 kb on + strand, within GFF1618 at 266.335 kb on + strand, within GFF1618 at 266.335 kb on + strand, within GFF1618 at 266.335 kb on + strand, within GFF1618 at 266.336 kb on - strand, within GFF1618 at 266.336 kb on - strand, within GFF1618 at 266.356 kb on + strand, within GFF1618 at 266.396 kb on - strand, within GFF1618 at 266.397 kb on + strand, within GFF1618 at 266.398 kb on - strand, within GFF1618 at 266.398 kb on - strand, within GFF1618 at 266.437 kb on + strand, within GFF1618 at 266.437 kb on + strand, within GFF1618 at 266.438 kb on - strand, within GFF1618 at 266.484 kb on + strand, within GFF1618 at 266.528 kb on - strand, within GFF1618 at 266.545 kb on + strand, within GFF1618 at 266.545 kb on + strand, within GFF1618 at 266.602 kb on + strand at 266.603 kb on - strand at 266.806 kb on - strand at 266.884 kb on + strand at 266.885 kb on - strand at 266.964 kb on + strand at 266.969 kb on + strand at 266.969 kb on + strand at 266.970 kb on - strand at 267.177 kb on - strand at 267.177 kb on - strand at 267.213 kb on + strand at 267.214 kb on - strand at 267.214 kb on - strand at 267.220 kb on - strand at 267.370 kb on + strand, within GFF1619 at 267.370 kb on + strand, within GFF1619 at 267.371 kb on - strand, within GFF1619 at 267.387 kb on + strand, within GFF1619 at 267.451 kb on + strand, within GFF1619 at 267.485 kb on - strand, within GFF1619 at 267.503 kb on - strand, within GFF1619 at 267.503 kb on - strand, within GFF1619 at 267.503 kb on - strand, within GFF1619 at 267.585 kb on + strand, within GFF1619 at 267.585 kb on + strand, within GFF1619 at 267.654 kb on + strand, within GFF1619 at 267.654 kb on + strand, within GFF1619 at 267.654 kb on + strand, within GFF1619
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 264,940 + GFF1615 0.23 -1.6 265,200 + GFF1615 0.77 -0.3 265,212 + GFF1615 0.80 -0.7 265,212 + GFF1615 0.80 +0.7 265,213 - GFF1615 0.80 -1.0 265,255 + GFF1615 0.89 +0.4 265,255 + GFF1615 0.89 -0.8 265,256 - GFF1615 0.89 -0.5 265,292 + -0.5 265,293 - -1.1 265,490 + -0.5 265,490 + +0.8 265,490 + +0.2 265,490 + +0.8 265,762 + -0.5 265,762 + -0.5 265,763 - +0.0 265,763 - -0.7 265,839 - +1.3 266,039 + GFF1618 0.18 -1.1 266,040 - GFF1618 0.18 +0.0 266,040 - GFF1618 0.18 +0.2 266,040 - GFF1618 0.18 -0.5 266,040 - GFF1618 0.18 +0.4 266,064 - GFF1618 0.21 -0.9 266,064 - GFF1618 0.21 +0.9 266,117 - GFF1618 0.28 -0.4 266,117 - GFF1618 0.28 -0.2 266,117 - GFF1618 0.28 -1.2 266,224 + GFF1618 0.41 +0.2 266,225 - GFF1618 0.42 +0.5 266,225 - GFF1618 0.42 +1.2 266,225 - GFF1618 0.42 +0.6 266,231 - GFF1618 0.42 +0.1 266,271 - GFF1618 0.48 +0.0 266,271 - GFF1618 0.48 -0.5 266,332 + GFF1618 0.55 +0.2 266,335 + GFF1618 0.56 -0.9 266,335 + GFF1618 0.56 +0.9 266,335 + GFF1618 0.56 -0.0 266,335 + GFF1618 0.56 -0.9 266,336 - GFF1618 0.56 -0.4 266,336 - GFF1618 0.56 -0.3 266,356 + GFF1618 0.59 +2.1 266,396 - GFF1618 0.64 +1.1 266,397 + GFF1618 0.64 +0.1 266,398 - GFF1618 0.64 -1.1 266,398 - GFF1618 0.64 -0.6 266,437 + GFF1618 0.69 +0.0 266,437 + GFF1618 0.69 -1.1 266,438 - GFF1618 0.69 +0.0 266,484 + GFF1618 0.75 -0.2 266,528 - GFF1618 0.81 +0.1 266,545 + GFF1618 0.83 -0.3 266,545 + GFF1618 0.83 +0.1 266,602 + -0.3 266,603 - -0.5 266,806 - -0.8 266,884 + +0.4 266,885 - +0.6 266,964 + +0.3 266,969 + +0.1 266,969 + +0.1 266,970 - -0.3 267,177 - +0.7 267,177 - +0.0 267,213 + +0.6 267,214 - +0.7 267,214 - -0.3 267,220 - +0.3 267,370 + GFF1619 0.18 +0.1 267,370 + GFF1619 0.18 -1.6 267,371 - GFF1619 0.18 -0.3 267,387 + GFF1619 0.19 -0.4 267,451 + GFF1619 0.24 -0.1 267,485 - GFF1619 0.26 -0.8 267,503 - GFF1619 0.27 +0.8 267,503 - GFF1619 0.27 +0.1 267,503 - GFF1619 0.27 +0.7 267,585 + GFF1619 0.33 -0.1 267,585 + GFF1619 0.33 +0.1 267,654 + GFF1619 0.38 -0.7 267,654 + GFF1619 0.38 -0.2 267,654 + GFF1619 0.38 -0.3
Or see this region's nucleotide sequence