Strain Fitness in Xanthobacter sp. DMC5 around GFF1607

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1605 and GFF1606 overlap by 62 nucleotidesGFF1606 and GFF1607 are separated by 68 nucleotidesGFF1607 and GFF1608 are separated by 90 nucleotides GFF1605 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 255,559 to 256,320 GFF1605 GFF1606 - Ribose import ATP-binding protein RbsA, at 256,259 to 257,020 GFF1606 GFF1607 - hypothetical protein, at 257,089 to 258,309 GFF1607 GFF1608 - Alcohol dehydrogenase [acceptor], at 258,400 to 260,055 GFF1608 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 256.092 kb on - strand, within GFF1605at 256.281 kb on + strandat 256.281 kb on + strandat 256.281 kb on + strandat 256.281 kb on + strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.321 kb on - strandat 256.582 kb on + strand, within GFF1606at 256.583 kb on - strand, within GFF1606at 256.617 kb on + strand, within GFF1606at 256.618 kb on - strand, within GFF1606at 256.618 kb on - strand, within GFF1606at 256.717 kb on - strand, within GFF1606at 256.808 kb on - strand, within GFF1606at 256.808 kb on - strand, within GFF1606at 256.859 kb on + strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.860 kb on - strand, within GFF1606at 256.934 kb on - strand, within GFF1606at 256.934 kb on - strand, within GFF1606at 257.026 kb on - strandat 257.071 kb on + strandat 257.166 kb on - strandat 257.213 kb on + strand, within GFF1607at 257.213 kb on + strand, within GFF1607at 257.214 kb on - strand, within GFF1607at 257.294 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.366 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.522 kb on + strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.523 kb on - strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.660 kb on + strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.661 kb on - strand, within GFF1607at 257.705 kb on - strand, within GFF1607at 257.705 kb on - strand, within GFF1607at 257.771 kb on + strand, within GFF1607at 257.772 kb on - strand, within GFF1607at 257.796 kb on + strand, within GFF1607at 257.796 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.846 kb on + strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.847 kb on - strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.850 kb on + strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.851 kb on - strand, within GFF1607at 257.921 kb on + strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 257.922 kb on - strand, within GFF1607at 258.300 kb on + strandat 258.301 kb on - strandat 258.301 kb on - strandat 258.345 kb on - strandat 258.379 kb on + strandat 258.443 kb on - strandat 258.482 kb on + strandat 258.483 kb on - strandat 258.483 kb on - strandat 258.483 kb on - strandat 258.483 kb on - strandat 258.483 kb on - strandat 258.623 kb on + strand, within GFF1608at 258.624 kb on - strand, within GFF1608at 258.624 kb on - strand, within GFF1608at 258.662 kb on + strand, within GFF1608at 258.710 kb on + strand, within GFF1608at 258.711 kb on - strand, within GFF1608at 258.738 kb on - strand, within GFF1608at 258.741 kb on + strand, within GFF1608at 258.748 kb on - strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.797 kb on + strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 258.798 kb on - strand, within GFF1608at 259.004 kb on + strand, within GFF1608at 259.004 kb on + strand, within GFF1608at 259.005 kb on - strand, within GFF1608at 259.143 kb on - strand, within GFF1608at 259.254 kb on + strand, within GFF1608at 259.254 kb on + strand, within GFF1608at 259.254 kb on + strand, within GFF1608at 259.255 kb on - strand, within GFF1608at 259.255 kb on - strand, within GFF1608

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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256,092 - GFF1605 0.70 -1.6
256,281 + -0.2
256,281 + -0.1
256,281 + -0.1
256,281 + +0.8
256,282 - +0.3
256,282 - +0.2
256,282 - -1.6
256,282 - +0.0
256,282 - -1.6
256,282 - -0.8
256,321 - -0.5
256,582 + GFF1606 0.42 +0.9
256,583 - GFF1606 0.43 -0.5
256,617 + GFF1606 0.47 +1.1
256,618 - GFF1606 0.47 -0.8
256,618 - GFF1606 0.47 -0.4
256,717 - GFF1606 0.60 -0.6
256,808 - GFF1606 0.72 +1.9
256,808 - GFF1606 0.72 +0.3
256,859 + GFF1606 0.79 -0.0
256,860 - GFF1606 0.79 +1.2
256,860 - GFF1606 0.79 -0.4
256,860 - GFF1606 0.79 -0.4
256,860 - GFF1606 0.79 +0.6
256,934 - GFF1606 0.89 -0.3
256,934 - GFF1606 0.89 -0.9
257,026 - -1.2
257,071 + -0.0
257,166 - +0.3
257,213 + GFF1607 0.10 +0.4
257,213 + GFF1607 0.10 -0.1
257,214 - GFF1607 0.10 -0.1
257,294 + GFF1607 0.17 -0.0
257,366 + GFF1607 0.23 -0.6
257,366 + GFF1607 0.23 -0.0
257,366 + GFF1607 0.23 -0.3
257,366 + GFF1607 0.23 -0.0
257,366 + GFF1607 0.23 +0.3
257,522 + GFF1607 0.35 +0.8
257,522 + GFF1607 0.35 +0.8
257,522 + GFF1607 0.35 +0.7
257,522 + GFF1607 0.35 -0.5
257,522 + GFF1607 0.35 -2.4
257,522 + GFF1607 0.35 -0.6
257,523 - GFF1607 0.36 +0.8
257,523 - GFF1607 0.36 -1.0
257,523 - GFF1607 0.36 +0.4
257,660 + GFF1607 0.47 -0.3
257,660 + GFF1607 0.47 -0.9
257,660 + GFF1607 0.47 -0.3
257,661 - GFF1607 0.47 +1.6
257,661 - GFF1607 0.47 +1.1
257,661 - GFF1607 0.47 +0.4
257,661 - GFF1607 0.47 +0.0
257,661 - GFF1607 0.47 +0.2
257,705 - GFF1607 0.50 +1.2
257,705 - GFF1607 0.50 -0.3
257,771 + GFF1607 0.56 -1.0
257,772 - GFF1607 0.56 -0.1
257,796 + GFF1607 0.58 -0.0
257,796 + GFF1607 0.58 +1.1
257,846 + GFF1607 0.62 +0.2
257,846 + GFF1607 0.62 -0.1
257,846 + GFF1607 0.62 -0.7
257,846 + GFF1607 0.62 -0.3
257,846 + GFF1607 0.62 +0.2
257,846 + GFF1607 0.62 +1.4
257,846 + GFF1607 0.62 +0.8
257,847 - GFF1607 0.62 -0.5
257,847 - GFF1607 0.62 -0.9
257,847 - GFF1607 0.62 -0.5
257,847 - GFF1607 0.62 +0.6
257,847 - GFF1607 0.62 -2.1
257,847 - GFF1607 0.62 -1.1
257,847 - GFF1607 0.62 +0.8
257,847 - GFF1607 0.62 -1.3
257,847 - GFF1607 0.62 +1.6
257,850 + GFF1607 0.62 -0.6
257,850 + GFF1607 0.62 -1.6
257,850 + GFF1607 0.62 -1.1
257,850 + GFF1607 0.62 -0.8
257,850 + GFF1607 0.62 +1.4
257,851 - GFF1607 0.62 -0.0
257,851 - GFF1607 0.62 +0.5
257,851 - GFF1607 0.62 -0.4
257,851 - GFF1607 0.62 +0.1
257,851 - GFF1607 0.62 +1.0
257,851 - GFF1607 0.62 +0.4
257,921 + GFF1607 0.68 -0.6
257,922 - GFF1607 0.68 +0.2
257,922 - GFF1607 0.68 +0.1
257,922 - GFF1607 0.68 -0.0
257,922 - GFF1607 0.68 -0.5
258,300 + -0.4
258,301 - +0.8
258,301 - +0.4
258,345 - -0.5
258,379 + -0.4
258,443 - +1.1
258,482 + -0.7
258,483 - +0.6
258,483 - +0.5
258,483 - +0.1
258,483 - -0.3
258,483 - -0.6
258,623 + GFF1608 0.13 -1.7
258,624 - GFF1608 0.14 +0.0
258,624 - GFF1608 0.14 +1.1
258,662 + GFF1608 0.16 -0.1
258,710 + GFF1608 0.19 -0.5
258,711 - GFF1608 0.19 -0.1
258,738 - GFF1608 0.20 -0.6
258,741 + GFF1608 0.21 -0.3
258,748 - GFF1608 0.21 +0.2
258,797 + GFF1608 0.24 +0.5
258,797 + GFF1608 0.24 +1.0
258,797 + GFF1608 0.24 -0.3
258,797 + GFF1608 0.24 -0.1
258,797 + GFF1608 0.24 +0.4
258,798 - GFF1608 0.24 +0.1
258,798 - GFF1608 0.24 +0.2
258,798 - GFF1608 0.24 -0.1
258,798 - GFF1608 0.24 -0.7
258,798 - GFF1608 0.24 +0.2
258,798 - GFF1608 0.24 -0.3
258,798 - GFF1608 0.24 -0.3
258,798 - GFF1608 0.24 -0.5
259,004 + GFF1608 0.36 +0.5
259,004 + GFF1608 0.36 +0.4
259,005 - GFF1608 0.37 +0.5
259,143 - GFF1608 0.45 +0.0
259,254 + GFF1608 0.52 +0.2
259,254 + GFF1608 0.52 -1.2
259,254 + GFF1608 0.52 +0.9
259,255 - GFF1608 0.52 -0.4
259,255 - GFF1608 0.52 +0.2

Or see this region's nucleotide sequence