Strain Fitness in Xanthobacter sp. DMC5 around GFF1561

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1559 and GFF1560 are separated by 70 nucleotidesGFF1560 and GFF1561 are separated by 51 nucleotidesGFF1561 and GFF1562 are separated by 63 nucleotides GFF1559 - HTH-type transcriptional repressor CytR, at 199,475 to 200,518 GFF1559 GFF1560 - hypothetical protein, at 200,589 to 200,891 GFF1560 GFF1561 - Acid-activated urea channel, at 200,943 to 201,461 GFF1561 GFF1562 - Formamidase, at 201,525 to 202,751 GFF1562 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1at 200.334 kb on + strand, within GFF1559at 200.334 kb on + strand, within GFF1559at 200.334 kb on + strand, within GFF1559at 200.335 kb on - strand, within GFF1559at 200.335 kb on - strand, within GFF1559at 200.335 kb on - strand, within GFF1559at 200.335 kb on - strand, within GFF1559at 200.431 kb on + strandat 200.431 kb on + strandat 200.431 kb on + strandat 200.693 kb on + strand, within GFF1560at 200.693 kb on + strand, within GFF1560at 200.693 kb on + strand, within GFF1560at 200.694 kb on - strand, within GFF1560at 200.694 kb on - strand, within GFF1560at 200.694 kb on - strand, within GFF1560at 200.876 kb on - strandat 200.876 kb on - strandat 200.881 kb on + strandat 200.881 kb on + strandat 200.881 kb on + strandat 200.881 kb on + strandat 200.882 kb on - strandat 200.882 kb on - strandat 200.882 kb on - strandat 201.067 kb on + strand, within GFF1561at 201.067 kb on + strand, within GFF1561at 201.068 kb on - strand, within GFF1561at 201.068 kb on - strand, within GFF1561at 201.232 kb on + strand, within GFF1561at 201.232 kb on + strand, within GFF1561at 201.232 kb on + strand, within GFF1561at 201.232 kb on + strand, within GFF1561at 201.233 kb on - strand, within GFF1561at 201.247 kb on + strand, within GFF1561at 201.247 kb on + strand, within GFF1561at 201.247 kb on + strand, within GFF1561at 201.247 kb on + strand, within GFF1561at 201.247 kb on + strand, within GFF1561at 201.248 kb on - strand, within GFF1561at 201.248 kb on - strand, within GFF1561at 201.322 kb on + strand, within GFF1561at 201.323 kb on - strand, within GFF1561at 201.436 kb on + strandat 201.437 kb on - strandat 201.466 kb on + strandat 201.695 kb on + strand, within GFF1562at 201.696 kb on - strand, within GFF1562at 201.696 kb on - strand, within GFF1562at 201.696 kb on - strand, within GFF1562at 201.696 kb on - strand, within GFF1562at 201.696 kb on - strand, within GFF1562at 201.696 kb on - strand, within GFF1562at 201.697 kb on + strand, within GFF1562at 201.697 kb on + strand, within GFF1562at 201.697 kb on + strand, within GFF1562at 201.698 kb on - strand, within GFF1562at 201.785 kb on - strand, within GFF1562at 201.787 kb on + strand, within GFF1562at 201.787 kb on + strand, within GFF1562at 201.787 kb on + strand, within GFF1562at 201.835 kb on + strand, within GFF1562at 201.836 kb on - strand, within GFF1562at 201.892 kb on + strand, within GFF1562at 201.893 kb on - strand, within GFF1562at 201.998 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.030 kb on + strand, within GFF1562at 202.031 kb on - strand, within GFF1562at 202.031 kb on - strand, within GFF1562at 202.031 kb on - strand, within GFF1562at 202.042 kb on + strand, within GFF1562at 202.042 kb on + strand, within GFF1562at 202.180 kb on + strand, within GFF1562at 202.180 kb on + strand, within GFF1562at 202.181 kb on - strand, within GFF1562at 202.181 kb on - strand, within GFF1562at 202.181 kb on - strand, within GFF1562at 202.312 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.345 kb on + strand, within GFF1562at 202.346 kb on - strand, within GFF1562at 202.346 kb on - strand, within GFF1562at 202.346 kb on - strand, within GFF1562at 202.346 kb on - strand, within GFF1562at 202.390 kb on + strand, within GFF1562

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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200,334 + GFF1559 0.82 -0.7
200,334 + GFF1559 0.82 -0.5
200,334 + GFF1559 0.82 -0.7
200,335 - GFF1559 0.82 -1.6
200,335 - GFF1559 0.82 -1.3
200,335 - GFF1559 0.82 -2.0
200,335 - GFF1559 0.82 +0.1
200,431 + -1.0
200,431 + -0.5
200,431 + +0.6
200,693 + GFF1560 0.34 -1.1
200,693 + GFF1560 0.34 +0.3
200,693 + GFF1560 0.34 +0.9
200,694 - GFF1560 0.35 +0.6
200,694 - GFF1560 0.35 -0.4
200,694 - GFF1560 0.35 -0.7
200,876 - -0.3
200,876 - +0.0
200,881 + -0.5
200,881 + +1.1
200,881 + +0.5
200,881 + -0.5
200,882 - -0.5
200,882 - -0.6
200,882 - -0.4
201,067 + GFF1561 0.24 -0.2
201,067 + GFF1561 0.24 +0.7
201,068 - GFF1561 0.24 -0.3
201,068 - GFF1561 0.24 +0.4
201,232 + GFF1561 0.56 -0.6
201,232 + GFF1561 0.56 +1.3
201,232 + GFF1561 0.56 -0.1
201,232 + GFF1561 0.56 +0.8
201,233 - GFF1561 0.56 +1.1
201,247 + GFF1561 0.59 -0.5
201,247 + GFF1561 0.59 +0.2
201,247 + GFF1561 0.59 +0.1
201,247 + GFF1561 0.59 -1.0
201,247 + GFF1561 0.59 +0.3
201,248 - GFF1561 0.59 +0.9
201,248 - GFF1561 0.59 -0.6
201,322 + GFF1561 0.73 -0.3
201,323 - GFF1561 0.73 -1.6
201,436 + +0.3
201,437 - -0.5
201,466 + +1.5
201,695 + GFF1562 0.14 +0.5
201,696 - GFF1562 0.14 +0.3
201,696 - GFF1562 0.14 -1.3
201,696 - GFF1562 0.14 +1.2
201,696 - GFF1562 0.14 -1.2
201,696 - GFF1562 0.14 -1.6
201,696 - GFF1562 0.14 +0.3
201,697 + GFF1562 0.14 +0.9
201,697 + GFF1562 0.14 -0.9
201,697 + GFF1562 0.14 +0.5
201,698 - GFF1562 0.14 +0.9
201,785 - GFF1562 0.21 -0.2
201,787 + GFF1562 0.21 -0.4
201,787 + GFF1562 0.21 +0.3
201,787 + GFF1562 0.21 -1.0
201,835 + GFF1562 0.25 -2.6
201,836 - GFF1562 0.25 +0.6
201,892 + GFF1562 0.30 +0.3
201,893 - GFF1562 0.30 +0.7
201,998 + GFF1562 0.39 -0.1
202,030 + GFF1562 0.41 +1.6
202,030 + GFF1562 0.41 +0.4
202,030 + GFF1562 0.41 +0.8
202,030 + GFF1562 0.41 +0.9
202,030 + GFF1562 0.41 -0.3
202,031 - GFF1562 0.41 -0.9
202,031 - GFF1562 0.41 +0.9
202,031 - GFF1562 0.41 +0.4
202,042 + GFF1562 0.42 -0.1
202,042 + GFF1562 0.42 -1.7
202,180 + GFF1562 0.53 +1.3
202,180 + GFF1562 0.53 -0.5
202,181 - GFF1562 0.53 -0.4
202,181 - GFF1562 0.53 -0.0
202,181 - GFF1562 0.53 +0.2
202,312 + GFF1562 0.64 +0.7
202,345 + GFF1562 0.67 +0.7
202,345 + GFF1562 0.67 -1.0
202,345 + GFF1562 0.67 -0.9
202,345 + GFF1562 0.67 -1.0
202,345 + GFF1562 0.67 -0.3
202,345 + GFF1562 0.67 -0.6
202,346 - GFF1562 0.67 +0.3
202,346 - GFF1562 0.67 -0.4
202,346 - GFF1562 0.67 -0.6
202,346 - GFF1562 0.67 -0.6
202,390 + GFF1562 0.70 -1.0

Or see this region's nucleotide sequence