Strain Fitness in Xanthobacter sp. DMC5 around GFF1545

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1543 and GFF1544 are separated by 141 nucleotidesGFF1544 and GFF1545 are separated by 13 nucleotidesGFF1545 and GFF1546 are separated by 55 nucleotides GFF1543 - hypothetical protein, at 183,704 to 184,225 GFF1543 GFF1544 - hypothetical protein, at 184,367 to 184,705 GFF1544 GFF1545 - Cobalt-containing nitrile hydratase subunit alpha, at 184,719 to 185,345 GFF1545 GFF1546 - Cobalt-containing nitrile hydratase subunit beta, at 185,401 to 186,075 GFF1546 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 183.771 kb on + strand, within GFF1543at 183.772 kb on - strand, within GFF1543at 183.901 kb on - strand, within GFF1543at 183.906 kb on + strand, within GFF1543at 183.907 kb on - strand, within GFF1543at 183.907 kb on - strand, within GFF1543at 183.943 kb on - strand, within GFF1543at 183.957 kb on + strand, within GFF1543at 183.957 kb on + strand, within GFF1543at 183.957 kb on + strand, within GFF1543at 183.958 kb on - strand, within GFF1543at 183.958 kb on - strand, within GFF1543at 183.958 kb on - strand, within GFF1543at 184.308 kb on - strandat 184.323 kb on + strandat 184.323 kb on + strandat 184.324 kb on - strandat 184.324 kb on - strandat 184.324 kb on - strandat 184.324 kb on - strandat 184.324 kb on - strandat 184.401 kb on + strand, within GFF1544at 184.485 kb on + strand, within GFF1544at 184.489 kb on - strand, within GFF1544at 184.575 kb on + strand, within GFF1544at 184.576 kb on - strand, within GFF1544at 184.576 kb on - strand, within GFF1544at 184.695 kb on + strandat 184.695 kb on + strandat 184.695 kb on + strandat 184.695 kb on + strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.697 kb on + strandat 184.828 kb on + strand, within GFF1545at 184.828 kb on + strand, within GFF1545at 184.829 kb on - strand, within GFF1545at 184.957 kb on + strand, within GFF1545at 185.281 kb on + strand, within GFF1545at 185.282 kb on - strand, within GFF1545at 185.285 kb on - strandat 185.285 kb on - strandat 185.285 kb on - strandat 185.437 kb on - strandat 185.502 kb on - strand, within GFF1546at 185.549 kb on + strand, within GFF1546at 185.550 kb on - strand, within GFF1546at 185.556 kb on - strand, within GFF1546at 185.556 kb on - strand, within GFF1546at 185.556 kb on - strand, within GFF1546at 185.556 kb on - strand, within GFF1546at 185.567 kb on + strand, within GFF1546at 185.568 kb on - strand, within GFF1546at 185.714 kb on + strand, within GFF1546at 185.714 kb on + strand, within GFF1546at 185.714 kb on + strand, within GFF1546at 185.714 kb on + strand, within GFF1546at 185.721 kb on - strand, within GFF1546at 185.721 kb on - strand, within GFF1546at 185.876 kb on + strand, within GFF1546at 185.876 kb on + strand, within GFF1546at 185.877 kb on - strand, within GFF1546at 185.886 kb on - strand, within GFF1546at 186.270 kb on + strandat 186.271 kb on - strandat 186.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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183,771 + GFF1543 0.13 -0.0
183,772 - GFF1543 0.13 -0.7
183,901 - GFF1543 0.38 -1.6
183,906 + GFF1543 0.39 +0.1
183,907 - GFF1543 0.39 -1.0
183,907 - GFF1543 0.39 -0.2
183,943 - GFF1543 0.46 -0.6
183,957 + GFF1543 0.48 -1.6
183,957 + GFF1543 0.48 -0.3
183,957 + GFF1543 0.48 -0.2
183,958 - GFF1543 0.49 +0.6
183,958 - GFF1543 0.49 -0.7
183,958 - GFF1543 0.49 -1.5
184,308 - +0.2
184,323 + -0.9
184,323 + +1.3
184,324 - -0.1
184,324 - -0.2
184,324 - +0.5
184,324 - -1.2
184,324 - -0.4
184,401 + GFF1544 0.10 +1.0
184,485 + GFF1544 0.35 -0.4
184,489 - GFF1544 0.36 +1.0
184,575 + GFF1544 0.61 +0.3
184,576 - GFF1544 0.62 +0.1
184,576 - GFF1544 0.62 -0.7
184,695 + -1.8
184,695 + +2.2
184,695 + +0.5
184,695 + -0.4
184,696 - -0.6
184,696 - -0.9
184,696 - -0.3
184,696 - -0.2
184,696 - +0.5
184,696 - +0.0
184,696 - -0.4
184,697 + -1.2
184,828 + GFF1545 0.17 +0.6
184,828 + GFF1545 0.17 +0.0
184,829 - GFF1545 0.18 -0.6
184,957 + GFF1545 0.38 +0.4
185,281 + GFF1545 0.90 -0.9
185,282 - GFF1545 0.90 -0.0
185,285 - -0.8
185,285 - -0.2
185,285 - -0.1
185,437 - +0.2
185,502 - GFF1546 0.15 -1.2
185,549 + GFF1546 0.22 +0.0
185,550 - GFF1546 0.22 -0.1
185,556 - GFF1546 0.23 +0.1
185,556 - GFF1546 0.23 +0.2
185,556 - GFF1546 0.23 -0.4
185,556 - GFF1546 0.23 +0.5
185,567 + GFF1546 0.25 -0.1
185,568 - GFF1546 0.25 -1.7
185,714 + GFF1546 0.46 -1.6
185,714 + GFF1546 0.46 -0.3
185,714 + GFF1546 0.46 +0.7
185,714 + GFF1546 0.46 -0.4
185,721 - GFF1546 0.47 +0.2
185,721 - GFF1546 0.47 -0.3
185,876 + GFF1546 0.70 -1.9
185,876 + GFF1546 0.70 +0.5
185,877 - GFF1546 0.71 -0.3
185,886 - GFF1546 0.72 +0.3
186,270 + +0.8
186,271 - +0.0
186,271 - +0.4

Or see this region's nucleotide sequence