Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1539 and GFF1540 are separated by 133 nucleotides GFF1540 and GFF1541 are separated by 192 nucleotides GFF1541 and GFF1542 are separated by 136 nucleotides GFF1542 and GFF1543 are separated by 46 nucleotides
GFF1539 - hypothetical protein, at 180,704 to 181,357
GFF1539
GFF1540 - hypothetical protein, at 181,491 to 181,808
GFF1540
GFF1541 - HTH-type transcriptional activator RhaR, at 182,001 to 182,897
GFF1541
GFF1542 - hypothetical protein, at 183,034 to 183,657
GFF1542
GFF1543 - hypothetical protein, at 183,704 to 184,225
GFF1543
Position (kb) 182
183 Strain fitness (log2 ratio) -1
0
1 at 181.303 kb on + strand at 181.327 kb on + strand at 181.422 kb on - strand at 181.660 kb on - strand, within GFF1540 at 181.704 kb on + strand, within GFF1540 at 181.705 kb on - strand, within GFF1540 at 181.767 kb on + strand, within GFF1540 at 181.768 kb on - strand, within GFF1540 at 181.919 kb on + strand at 181.919 kb on + strand at 181.920 kb on - strand at 181.920 kb on - strand at 182.154 kb on + strand, within GFF1541 at 182.154 kb on + strand, within GFF1541 at 182.155 kb on - strand, within GFF1541 at 182.155 kb on - strand, within GFF1541 at 182.353 kb on + strand, within GFF1541 at 182.602 kb on + strand, within GFF1541 at 182.602 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.626 kb on + strand, within GFF1541 at 182.627 kb on - strand, within GFF1541 at 182.650 kb on + strand, within GFF1541 at 182.935 kb on - strand at 182.935 kb on - strand at 182.955 kb on - strand at 182.975 kb on + strand at 182.976 kb on - strand at 182.976 kb on - strand at 182.976 kb on - strand at 182.976 kb on - strand at 182.983 kb on - strand at 182.995 kb on - strand at 183.198 kb on - strand, within GFF1542 at 183.249 kb on - strand, within GFF1542 at 183.497 kb on - strand, within GFF1542 at 183.771 kb on + strand, within GFF1543 at 183.772 kb on - strand, within GFF1543
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 181,303 + -0.3 181,327 + -1.1 181,422 - -1.4 181,660 - GFF1540 0.53 -0.9 181,704 + GFF1540 0.67 -0.0 181,705 - GFF1540 0.67 -0.4 181,767 + GFF1540 0.87 -0.3 181,768 - GFF1540 0.87 +0.2 181,919 + +0.8 181,919 + +0.2 181,920 - -0.5 181,920 - -0.4 182,154 + GFF1541 0.17 -1.1 182,154 + GFF1541 0.17 +1.2 182,155 - GFF1541 0.17 +0.5 182,155 - GFF1541 0.17 -0.3 182,353 + GFF1541 0.39 +0.7 182,602 + GFF1541 0.67 +1.2 182,602 + GFF1541 0.67 -0.2 182,626 + GFF1541 0.70 -1.5 182,626 + GFF1541 0.70 +0.7 182,626 + GFF1541 0.70 +0.0 182,626 + GFF1541 0.70 -0.4 182,626 + GFF1541 0.70 +0.1 182,627 - GFF1541 0.70 +0.5 182,650 + GFF1541 0.72 -1.3 182,935 - -0.7 182,935 - +0.6 182,955 - -0.1 182,975 + +0.1 182,976 - -1.5 182,976 - +0.9 182,976 - +0.2 182,976 - +0.1 182,983 - +0.0 182,995 - -0.9 183,198 - GFF1542 0.26 -0.5 183,249 - GFF1542 0.34 -0.4 183,497 - GFF1542 0.74 -0.6 183,771 + GFF1543 0.13 -0.0 183,772 - GFF1543 0.13 -0.7
Or see this region's nucleotide sequence