Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1532 and GFF1533 are separated by 118 nucleotides GFF1533 and GFF1534 are separated by 24 nucleotides
GFF1532 - hypothetical protein, at 172,857 to 174,182
GFF1532
GFF1533 - HTH-type transcriptional regulator GntR, at 174,301 to 175,353
GFF1533
GFF1534 - Enterobactin exporter EntS, at 175,378 to 176,988
GFF1534
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1 at 173.323 kb on + strand, within GFF1532 at 173.488 kb on + strand, within GFF1532 at 173.875 kb on + strand, within GFF1532 at 173.875 kb on + strand, within GFF1532 at 173.876 kb on - strand, within GFF1532 at 173.876 kb on - strand, within GFF1532 at 173.887 kb on + strand, within GFF1532 at 173.999 kb on - strand, within GFF1532 at 174.056 kb on - strand at 174.241 kb on + strand at 174.241 kb on + strand at 174.242 kb on - strand at 174.265 kb on + strand at 174.265 kb on + strand at 174.266 kb on - strand at 174.463 kb on + strand, within GFF1533 at 174.463 kb on + strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.464 kb on - strand, within GFF1533 at 174.469 kb on + strand, within GFF1533 at 174.469 kb on + strand, within GFF1533 at 174.470 kb on - strand, within GFF1533 at 174.625 kb on + strand, within GFF1533 at 174.625 kb on + strand, within GFF1533 at 174.626 kb on - strand, within GFF1533 at 174.864 kb on + strand, within GFF1533 at 174.922 kb on + strand, within GFF1533 at 174.923 kb on - strand, within GFF1533 at 175.207 kb on + strand, within GFF1533 at 175.207 kb on + strand, within GFF1533 at 175.207 kb on + strand, within GFF1533 at 175.580 kb on + strand, within GFF1534 at 175.580 kb on + strand, within GFF1534 at 175.580 kb on + strand, within GFF1534 at 175.580 kb on + strand, within GFF1534 at 175.580 kb on + strand, within GFF1534 at 175.581 kb on - strand, within GFF1534 at 175.661 kb on + strand, within GFF1534 at 175.907 kb on + strand, within GFF1534 at 175.908 kb on - strand, within GFF1534 at 175.908 kb on - strand, within GFF1534 at 175.908 kb on - strand, within GFF1534 at 175.908 kb on - strand, within GFF1534 at 175.938 kb on + strand, within GFF1534 at 175.938 kb on + strand, within GFF1534 at 175.938 kb on + strand, within GFF1534 at 175.939 kb on - strand, within GFF1534 at 176.183 kb on + strand, within GFF1534 at 176.184 kb on - strand, within GFF1534 at 176.186 kb on + strand, within GFF1534 at 176.313 kb on - strand, within GFF1534
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 173,323 + GFF1532 0.35 -0.3 173,488 + GFF1532 0.48 -0.3 173,875 + GFF1532 0.77 +1.1 173,875 + GFF1532 0.77 +0.8 173,876 - GFF1532 0.77 -0.7 173,876 - GFF1532 0.77 -1.1 173,887 + GFF1532 0.78 +0.0 173,999 - GFF1532 0.86 -0.3 174,056 - +0.1 174,241 + +0.1 174,241 + +0.2 174,242 - +0.1 174,265 + -0.6 174,265 + +0.4 174,266 - -0.2 174,463 + GFF1533 0.15 -0.8 174,463 + GFF1533 0.15 -0.3 174,464 - GFF1533 0.15 -0.0 174,464 - GFF1533 0.15 -0.7 174,464 - GFF1533 0.15 -0.4 174,464 - GFF1533 0.15 -0.8 174,464 - GFF1533 0.15 -0.2 174,469 + GFF1533 0.16 +1.5 174,469 + GFF1533 0.16 -1.8 174,470 - GFF1533 0.16 +0.5 174,625 + GFF1533 0.31 -0.7 174,625 + GFF1533 0.31 -0.4 174,626 - GFF1533 0.31 -0.0 174,864 + GFF1533 0.53 -0.3 174,922 + GFF1533 0.59 -1.3 174,923 - GFF1533 0.59 -0.5 175,207 + GFF1533 0.86 +0.5 175,207 + GFF1533 0.86 -0.3 175,207 + GFF1533 0.86 -0.3 175,580 + GFF1534 0.13 -0.4 175,580 + GFF1534 0.13 -0.3 175,580 + GFF1534 0.13 -0.2 175,580 + GFF1534 0.13 +1.2 175,580 + GFF1534 0.13 +0.2 175,581 - GFF1534 0.13 +0.9 175,661 + GFF1534 0.18 -0.1 175,907 + GFF1534 0.33 -0.2 175,908 - GFF1534 0.33 +0.1 175,908 - GFF1534 0.33 -0.0 175,908 - GFF1534 0.33 -0.1 175,908 - GFF1534 0.33 -0.9 175,938 + GFF1534 0.35 -1.1 175,938 + GFF1534 0.35 -0.2 175,938 + GFF1534 0.35 -0.5 175,939 - GFF1534 0.35 -0.5 176,183 + GFF1534 0.50 -0.8 176,184 - GFF1534 0.50 +0.2 176,186 + GFF1534 0.50 -0.5 176,313 - GFF1534 0.58 -0.4
Or see this region's nucleotide sequence