Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1525 and GFF1526 overlap by 1 nucleotides GFF1526 and GFF1527 overlap by 8 nucleotides GFF1527 and GFF1528 are separated by 13 nucleotides
GFF1525 - hypothetical protein, at 165,046 to 165,927
GFF1525
GFF1526 - Lipopolysaccharide export system ATP-binding protein LptB, at 165,927 to 166,697
GFF1526
GFF1527 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 166,690 to 167,418
GFF1527
GFF1528 - putative sulfate transporter, at 167,432 to 169,147
GFF1528
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 165.700 kb on + strand, within GFF1525 at 165.701 kb on - strand, within GFF1525 at 166.090 kb on - strand, within GFF1526 at 166.411 kb on + strand, within GFF1526 at 166.412 kb on - strand, within GFF1526 at 166.552 kb on + strand, within GFF1526 at 166.553 kb on - strand, within GFF1526 at 166.674 kb on + strand at 166.674 kb on + strand at 166.674 kb on + strand at 166.993 kb on + strand, within GFF1527 at 166.994 kb on - strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.042 kb on - strand, within GFF1527 at 167.080 kb on + strand, within GFF1527 at 167.081 kb on - strand, within GFF1527 at 167.296 kb on + strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.298 kb on - strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.380 kb on + strand at 167.381 kb on - strand at 167.758 kb on + strand, within GFF1528 at 167.829 kb on + strand, within GFF1528 at 167.830 kb on - strand, within GFF1528 at 167.877 kb on + strand, within GFF1528 at 168.008 kb on + strand, within GFF1528 at 168.009 kb on - strand, within GFF1528 at 168.009 kb on - strand, within GFF1528
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 165,700 + GFF1525 0.74 -0.4 165,701 - GFF1525 0.74 +0.1 166,090 - GFF1526 0.21 -0.9 166,411 + GFF1526 0.63 +0.4 166,412 - GFF1526 0.63 +1.8 166,552 + GFF1526 0.81 +0.1 166,553 - GFF1526 0.81 -0.6 166,674 + -1.6 166,674 + -0.3 166,674 + +0.9 166,993 + GFF1527 0.42 +1.2 166,994 - GFF1527 0.42 +0.2 167,041 + GFF1527 0.48 -1.4 167,041 + GFF1527 0.48 +0.2 167,041 + GFF1527 0.48 +0.3 167,042 - GFF1527 0.48 -1.7 167,080 + GFF1527 0.53 -0.9 167,081 - GFF1527 0.54 +0.1 167,296 + GFF1527 0.83 -0.4 167,297 - GFF1527 0.83 +1.4 167,297 - GFF1527 0.83 +0.6 167,297 - GFF1527 0.83 +0.6 167,297 - GFF1527 0.83 +0.8 167,297 - GFF1527 0.83 +0.4 167,297 - GFF1527 0.83 -1.9 167,297 - GFF1527 0.83 +1.1 167,297 - GFF1527 0.83 -0.8 167,297 - GFF1527 0.83 -1.8 167,298 - GFF1527 0.83 -0.2 167,302 + GFF1527 0.84 +3.1 167,302 + GFF1527 0.84 +0.1 167,302 + GFF1527 0.84 -0.8 167,303 - GFF1527 0.84 +0.3 167,303 - GFF1527 0.84 -0.2 167,303 - GFF1527 0.84 -2.9 167,303 - GFF1527 0.84 +0.6 167,303 - GFF1527 0.84 +0.9 167,303 - GFF1527 0.84 -1.3 167,380 + -1.0 167,381 - +0.5 167,758 + GFF1528 0.19 +0.4 167,829 + GFF1528 0.23 -0.1 167,830 - GFF1528 0.23 +1.2 167,877 + GFF1528 0.26 +0.8 168,008 + GFF1528 0.34 -0.4 168,009 - GFF1528 0.34 +0.6 168,009 - GFF1528 0.34 -0.1
Or see this region's nucleotide sequence