Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1518 and GFF1519 overlap by 4 nucleotides GFF1519 and GFF1520 are separated by 119 nucleotides
GFF1518 - Orotidine 5'-phosphate decarboxylase, at 157,658 to 158,407
GFF1518
GFF1519 - Betaine aldehyde dehydrogenase, at 158,404 to 159,861
GFF1519
GFF1520 - Imidazolonepropionase, at 159,981 to 161,237
GFF1520
Position (kb) 158
159
160 Strain fitness (log2 ratio) -1
0
1 at 157.576 kb on - strand at 157.621 kb on - strand at 157.788 kb on - strand, within GFF1518 at 157.874 kb on + strand, within GFF1518 at 157.874 kb on + strand, within GFF1518 at 157.875 kb on - strand, within GFF1518 at 158.369 kb on + strand at 158.370 kb on - strand at 158.758 kb on + strand, within GFF1519 at 158.758 kb on + strand, within GFF1519 at 158.758 kb on + strand, within GFF1519 at 158.758 kb on + strand, within GFF1519 at 158.759 kb on - strand, within GFF1519 at 158.759 kb on - strand, within GFF1519 at 158.761 kb on + strand, within GFF1519 at 159.234 kb on - strand, within GFF1519 at 159.423 kb on - strand, within GFF1519 at 159.634 kb on + strand, within GFF1519 at 159.635 kb on - strand, within GFF1519 at 159.635 kb on - strand, within GFF1519 at 159.807 kb on - strand at 159.860 kb on - strand at 159.980 kb on + strand at 159.981 kb on - strand at 160.070 kb on + strand at 160.186 kb on - strand, within GFF1520 at 160.186 kb on - strand, within GFF1520 at 160.186 kb on - strand, within GFF1520 at 160.230 kb on + strand, within GFF1520 at 160.230 kb on + strand, within GFF1520 at 160.231 kb on - strand, within GFF1520 at 160.231 kb on - strand, within GFF1520 at 160.411 kb on - strand, within GFF1520
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 157,576 - -1.3 157,621 - +0.1 157,788 - GFF1518 0.17 +0.5 157,874 + GFF1518 0.29 -0.1 157,874 + GFF1518 0.29 -0.7 157,875 - GFF1518 0.29 -0.9 158,369 + +0.6 158,370 - -0.3 158,758 + GFF1519 0.24 +0.0 158,758 + GFF1519 0.24 -1.1 158,758 + GFF1519 0.24 +0.5 158,758 + GFF1519 0.24 +0.3 158,759 - GFF1519 0.24 -0.1 158,759 - GFF1519 0.24 -0.9 158,761 + GFF1519 0.24 +0.8 159,234 - GFF1519 0.57 +0.7 159,423 - GFF1519 0.70 -0.0 159,634 + GFF1519 0.84 +1.1 159,635 - GFF1519 0.84 -1.6 159,635 - GFF1519 0.84 -0.8 159,807 - -0.4 159,860 - -0.4 159,980 + +0.5 159,981 - -0.3 160,070 + +1.1 160,186 - GFF1520 0.16 +0.0 160,186 - GFF1520 0.16 -0.6 160,186 - GFF1520 0.16 -1.3 160,230 + GFF1520 0.20 +0.2 160,230 + GFF1520 0.20 -0.3 160,231 - GFF1520 0.20 +1.6 160,231 - GFF1520 0.20 -0.7 160,411 - GFF1520 0.34 -0.1
Or see this region's nucleotide sequence