Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1508 and GFF1509 are separated by 43 nucleotides GFF1509 and GFF1510 are separated by 96 nucleotides GFF1510 and GFF1511 overlap by 14 nucleotides
GFF1508 - Putative metal chaperone YciC, at 145,283 to 146,521
GFF1508
GFF1509 - Putative 3-oxopropanoate dehydrogenase, at 146,565 to 148,064
GFF1509
GFF1510 - HTH-type transcriptional regulator DmlR, at 148,161 to 149,063
GFF1510
GFF1511 - HTH-type transcriptional regulator HdfR, at 149,050 to 149,943
GFF1511
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -2
-1
0
1 at 146.078 kb on + strand, within GFF1508 at 146.079 kb on - strand, within GFF1508 at 146.349 kb on - strand, within GFF1508 at 146.647 kb on + strand at 146.648 kb on - strand at 146.872 kb on + strand, within GFF1509 at 146.872 kb on + strand, within GFF1509 at 146.873 kb on - strand, within GFF1509 at 146.923 kb on + strand, within GFF1509 at 146.923 kb on + strand, within GFF1509 at 146.970 kb on - strand, within GFF1509 at 147.367 kb on + strand, within GFF1509 at 147.368 kb on - strand, within GFF1509 at 147.368 kb on - strand, within GFF1509 at 147.991 kb on + strand at 147.992 kb on - strand at 148.483 kb on - strand, within GFF1510 at 148.680 kb on + strand, within GFF1510 at 148.680 kb on + strand, within GFF1510 at 148.680 kb on + strand, within GFF1510 at 148.680 kb on + strand, within GFF1510 at 148.762 kb on - strand, within GFF1510 at 148.762 kb on - strand, within GFF1510 at 148.762 kb on - strand, within GFF1510 at 148.779 kb on + strand, within GFF1510 at 148.780 kb on - strand, within GFF1510 at 148.899 kb on + strand, within GFF1510 at 148.900 kb on - strand, within GFF1510 at 148.900 kb on - strand, within GFF1510 at 148.902 kb on + strand, within GFF1510
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 146,078 + GFF1508 0.64 -0.3 146,079 - GFF1508 0.64 +0.1 146,349 - GFF1508 0.86 -0.1 146,647 + +0.9 146,648 - -0.0 146,872 + GFF1509 0.20 -0.3 146,872 + GFF1509 0.20 +1.1 146,873 - GFF1509 0.21 -0.5 146,923 + GFF1509 0.24 +0.2 146,923 + GFF1509 0.24 +0.3 146,970 - GFF1509 0.27 +1.6 147,367 + GFF1509 0.53 +0.7 147,368 - GFF1509 0.54 -0.5 147,368 - GFF1509 0.54 -1.9 147,991 + +0.1 147,992 - -0.3 148,483 - GFF1510 0.36 -2.6 148,680 + GFF1510 0.57 +0.7 148,680 + GFF1510 0.57 +0.1 148,680 + GFF1510 0.57 +0.4 148,680 + GFF1510 0.57 -0.1 148,762 - GFF1510 0.67 +0.1 148,762 - GFF1510 0.67 -1.5 148,762 - GFF1510 0.67 +1.2 148,779 + GFF1510 0.68 -1.6 148,780 - GFF1510 0.69 +0.6 148,899 + GFF1510 0.82 +0.5 148,900 - GFF1510 0.82 -1.3 148,900 - GFF1510 0.82 +0.5 148,902 + GFF1510 0.82 -1.1
Or see this region's nucleotide sequence