Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1506 and GFF1507 are separated by 102 nucleotides GFF1507 and GFF1508 are separated by 182 nucleotides GFF1508 and GFF1509 are separated by 43 nucleotides
GFF1506 - hypothetical protein, at 144,093 to 144,638
GFF1506
GFF1507 - hypothetical protein, at 144,741 to 145,100
GFF1507
GFF1508 - Putative metal chaperone YciC, at 145,283 to 146,521
GFF1508
GFF1509 - Putative 3-oxopropanoate dehydrogenase, at 146,565 to 148,064
GFF1509
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1 at 144.509 kb on - strand, within GFF1506 at 144.509 kb on - strand, within GFF1506 at 144.509 kb on - strand, within GFF1506 at 144.590 kb on - strand at 145.048 kb on + strand, within GFF1507 at 145.049 kb on - strand, within GFF1507 at 145.103 kb on - strand at 145.310 kb on - strand at 146.078 kb on + strand, within GFF1508 at 146.079 kb on - strand, within GFF1508 at 146.349 kb on - strand, within GFF1508 at 146.647 kb on + strand at 146.648 kb on - strand at 146.872 kb on + strand, within GFF1509 at 146.872 kb on + strand, within GFF1509 at 146.873 kb on - strand, within GFF1509 at 146.923 kb on + strand, within GFF1509 at 146.923 kb on + strand, within GFF1509 at 146.970 kb on - strand, within GFF1509 at 147.367 kb on + strand, within GFF1509 at 147.368 kb on - strand, within GFF1509 at 147.368 kb on - strand, within GFF1509
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 144,509 - GFF1506 0.76 -0.4 144,509 - GFF1506 0.76 +0.1 144,509 - GFF1506 0.76 -0.4 144,590 - -0.6 145,048 + GFF1507 0.85 -1.1 145,049 - GFF1507 0.86 +0.3 145,103 - +0.1 145,310 - +0.6 146,078 + GFF1508 0.64 -0.3 146,079 - GFF1508 0.64 +0.1 146,349 - GFF1508 0.86 -0.1 146,647 + +0.9 146,648 - -0.0 146,872 + GFF1509 0.20 -0.3 146,872 + GFF1509 0.20 +1.1 146,873 - GFF1509 0.21 -0.5 146,923 + GFF1509 0.24 +0.2 146,923 + GFF1509 0.24 +0.3 146,970 - GFF1509 0.27 +1.6 147,367 + GFF1509 0.53 +0.7 147,368 - GFF1509 0.54 -0.5 147,368 - GFF1509 0.54 -1.9
Or see this region's nucleotide sequence