Strain Fitness in Xanthobacter sp. DMC5 around GFF1472

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1471 and GFF1472 are separated by 14 nucleotidesGFF1472 and GFF1473 are separated by 42 nucleotidesGFF1473 and GFF1474 are separated by 12 nucleotides GFF1471 - L-cysteine S-thiosulfotransferase subunit SoxA, at 109,930 to 110,760 GFF1471 GFF1472 - hypothetical protein, at 110,775 to 111,401 GFF1472 GFF1473 - hypothetical protein, at 111,444 to 112,010 GFF1473 GFF1474 - Thiol:disulfide interchange protein DsbD, at 112,023 to 112,748 GFF1474 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 109.838 kb on + strandat 109.838 kb on + strandat 109.838 kb on + strandat 109.839 kb on - strandat 109.839 kb on - strandat 109.839 kb on - strandat 109.927 kb on + strandat 109.927 kb on + strandat 109.927 kb on + strandat 109.928 kb on - strandat 109.928 kb on - strandat 109.928 kb on - strandat 109.928 kb on - strandat 110.042 kb on - strand, within GFF1471at 110.191 kb on + strand, within GFF1471at 110.192 kb on - strand, within GFF1471at 110.209 kb on + strand, within GFF1471at 110.210 kb on - strand, within GFF1471at 110.416 kb on + strand, within GFF1471at 110.425 kb on + strand, within GFF1471at 110.425 kb on + strand, within GFF1471at 110.426 kb on - strand, within GFF1471at 110.426 kb on - strand, within GFF1471at 110.426 kb on - strand, within GFF1471at 110.449 kb on + strand, within GFF1471at 110.587 kb on + strand, within GFF1471at 110.587 kb on + strand, within GFF1471at 110.588 kb on - strand, within GFF1471at 110.588 kb on - strand, within GFF1471at 110.588 kb on - strand, within GFF1471at 110.588 kb on - strand, within GFF1471at 110.671 kb on + strand, within GFF1471at 110.672 kb on - strand, within GFF1471at 111.142 kb on - strand, within GFF1472at 111.142 kb on - strand, within GFF1472at 111.177 kb on + strand, within GFF1472at 111.177 kb on + strand, within GFF1472at 111.252 kb on + strand, within GFF1472at 111.264 kb on + strand, within GFF1472at 111.264 kb on + strand, within GFF1472at 111.265 kb on - strand, within GFF1472at 111.357 kb on + strandat 111.358 kb on - strandat 111.512 kb on - strand, within GFF1473at 111.760 kb on + strand, within GFF1473at 111.785 kb on - strand, within GFF1473at 111.785 kb on - strand, within GFF1473at 111.785 kb on - strand, within GFF1473at 111.880 kb on + strand, within GFF1473at 111.880 kb on + strand, within GFF1473at 111.881 kb on - strand, within GFF1473at 111.881 kb on - strand, within GFF1473at 111.881 kb on - strand, within GFF1473at 111.881 kb on - strand, within GFF1473at 111.881 kb on - strand, within GFF1473at 111.881 kb on - strand, within GFF1473at 111.893 kb on + strand, within GFF1473at 111.894 kb on - strand, within GFF1473at 111.895 kb on + strand, within GFF1473at 111.896 kb on - strand, within GFF1473at 111.896 kb on - strand, within GFF1473at 111.896 kb on - strand, within GFF1473at 111.896 kb on - strand, within GFF1473at 112.237 kb on + strand, within GFF1474at 112.360 kb on + strand, within GFF1474at 112.360 kb on + strand, within GFF1474at 112.361 kb on - strand, within GFF1474

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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109,838 + -1.4
109,838 + -0.8
109,838 + +0.4
109,839 - -0.1
109,839 - +0.4
109,839 - +0.6
109,927 + -0.8
109,927 + +0.5
109,927 + +0.3
109,928 - -1.8
109,928 - +1.1
109,928 - -2.0
109,928 - +0.1
110,042 - GFF1471 0.13 -0.9
110,191 + GFF1471 0.31 +0.2
110,192 - GFF1471 0.32 -0.0
110,209 + GFF1471 0.34 +0.5
110,210 - GFF1471 0.34 -0.1
110,416 + GFF1471 0.58 -1.3
110,425 + GFF1471 0.60 +0.5
110,425 + GFF1471 0.60 -0.9
110,426 - GFF1471 0.60 +1.9
110,426 - GFF1471 0.60 +0.2
110,426 - GFF1471 0.60 +0.4
110,449 + GFF1471 0.62 +0.4
110,587 + GFF1471 0.79 +0.2
110,587 + GFF1471 0.79 +0.5
110,588 - GFF1471 0.79 +0.2
110,588 - GFF1471 0.79 -0.4
110,588 - GFF1471 0.79 -0.0
110,588 - GFF1471 0.79 -0.4
110,671 + GFF1471 0.89 +0.6
110,672 - GFF1471 0.89 -0.4
111,142 - GFF1472 0.59 -0.3
111,142 - GFF1472 0.59 -0.8
111,177 + GFF1472 0.64 +1.3
111,177 + GFF1472 0.64 +0.6
111,252 + GFF1472 0.76 -0.5
111,264 + GFF1472 0.78 +0.2
111,264 + GFF1472 0.78 -0.8
111,265 - GFF1472 0.78 -1.5
111,357 + +0.6
111,358 - +1.0
111,512 - GFF1473 0.12 +2.1
111,760 + GFF1473 0.56 -0.9
111,785 - GFF1473 0.60 +1.3
111,785 - GFF1473 0.60 +0.5
111,785 - GFF1473 0.60 +0.1
111,880 + GFF1473 0.77 +0.1
111,880 + GFF1473 0.77 +1.4
111,881 - GFF1473 0.77 +0.3
111,881 - GFF1473 0.77 -1.2
111,881 - GFF1473 0.77 -1.3
111,881 - GFF1473 0.77 +0.7
111,881 - GFF1473 0.77 -0.0
111,881 - GFF1473 0.77 -0.8
111,893 + GFF1473 0.79 +0.7
111,894 - GFF1473 0.79 +1.7
111,895 + GFF1473 0.80 -2.6
111,896 - GFF1473 0.80 +0.4
111,896 - GFF1473 0.80 +0.8
111,896 - GFF1473 0.80 -0.2
111,896 - GFF1473 0.80 +0.4
112,237 + GFF1474 0.29 +0.8
112,360 + GFF1474 0.46 +0.7
112,360 + GFF1474 0.46 -0.4
112,361 - GFF1474 0.47 +0.6

Or see this region's nucleotide sequence