Strain Fitness in Xanthobacter sp. DMC5 around GFF1452

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1450 and GFF1451 are separated by 175 nucleotidesGFF1451 and GFF1452 are separated by 109 nucleotidesGFF1452 and GFF1453 are separated by 291 nucleotides GFF1450 - hypothetical protein, at 72,937 to 75,900 GFF1450 GFF1451 - hypothetical protein, at 76,076 to 76,570 GFF1451 GFF1452 - hypothetical protein, at 76,680 to 81,659 GFF1452 GFF1453 - Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, at 81,951 to 85,154 GFF1453 Position (kb) 76 77 78 79 80 81 82Strain fitness (log2 ratio) -2 -1 0 1 2at 75.714 kb on + strandat 75.715 kb on - strandat 75.728 kb on + strandat 75.834 kb on - strandat 75.884 kb on + strandat 75.885 kb on - strandat 75.935 kb on + strandat 75.942 kb on + strandat 76.001 kb on - strandat 76.018 kb on + strandat 76.019 kb on - strandat 76.023 kb on + strandat 76.227 kb on + strand, within GFF1451at 76.228 kb on - strand, within GFF1451at 76.228 kb on - strand, within GFF1451at 76.233 kb on + strand, within GFF1451at 76.233 kb on + strand, within GFF1451at 76.383 kb on + strand, within GFF1451at 76.384 kb on - strand, within GFF1451at 76.384 kb on - strand, within GFF1451at 76.384 kb on - strand, within GFF1451at 76.384 kb on - strand, within GFF1451at 76.476 kb on + strand, within GFF1451at 76.476 kb on + strand, within GFF1451at 76.477 kb on - strand, within GFF1451at 76.477 kb on - strand, within GFF1451at 76.477 kb on - strand, within GFF1451at 76.477 kb on - strand, within GFF1451at 76.601 kb on + strandat 76.663 kb on + strandat 76.690 kb on + strandat 76.723 kb on + strandat 76.724 kb on - strandat 76.862 kb on - strandat 76.862 kb on - strandat 76.945 kb on + strandat 76.946 kb on - strandat 77.056 kb on + strandat 77.056 kb on + strandat 77.056 kb on + strandat 77.056 kb on + strandat 77.057 kb on - strandat 77.057 kb on - strandat 77.057 kb on - strandat 77.194 kb on + strand, within GFF1452at 77.195 kb on - strand, within GFF1452at 77.195 kb on - strand, within GFF1452at 77.255 kb on - strand, within GFF1452at 77.255 kb on - strand, within GFF1452at 77.255 kb on - strand, within GFF1452at 77.255 kb on - strand, within GFF1452at 77.287 kb on + strand, within GFF1452at 77.335 kb on + strand, within GFF1452at 77.335 kb on + strand, within GFF1452at 77.336 kb on - strand, within GFF1452at 77.422 kb on + strand, within GFF1452at 77.449 kb on + strand, within GFF1452at 77.449 kb on + strand, within GFF1452at 77.449 kb on + strand, within GFF1452at 77.449 kb on + strand, within GFF1452at 77.449 kb on + strand, within GFF1452at 77.450 kb on - strand, within GFF1452at 77.450 kb on - strand, within GFF1452at 77.450 kb on - strand, within GFF1452at 77.450 kb on - strand, within GFF1452at 77.450 kb on - strand, within GFF1452at 77.455 kb on + strand, within GFF1452at 77.456 kb on - strand, within GFF1452at 77.456 kb on - strand, within GFF1452at 77.599 kb on + strand, within GFF1452at 77.599 kb on + strand, within GFF1452at 77.647 kb on + strand, within GFF1452at 77.648 kb on - strand, within GFF1452at 77.690 kb on - strand, within GFF1452at 77.719 kb on + strand, within GFF1452at 77.719 kb on + strand, within GFF1452at 77.750 kb on - strand, within GFF1452at 77.750 kb on - strand, within GFF1452at 77.842 kb on + strand, within GFF1452at 77.842 kb on + strand, within GFF1452at 77.851 kb on + strand, within GFF1452at 77.905 kb on + strand, within GFF1452at 77.906 kb on - strand, within GFF1452at 78.103 kb on + strand, within GFF1452at 78.103 kb on + strand, within GFF1452at 78.103 kb on + strand, within GFF1452at 78.103 kb on + strand, within GFF1452at 78.103 kb on + strand, within GFF1452at 78.104 kb on - strand, within GFF1452at 78.104 kb on - strand, within GFF1452at 78.104 kb on - strand, within GFF1452at 78.104 kb on - strand, within GFF1452at 78.104 kb on - strand, within GFF1452at 78.104 kb on - strand, within GFF1452at 78.125 kb on + strand, within GFF1452at 78.126 kb on - strand, within GFF1452at 78.127 kb on + strand, within GFF1452at 78.127 kb on + strand, within GFF1452at 78.127 kb on + strand, within GFF1452at 78.127 kb on + strand, within GFF1452at 78.128 kb on - strand, within GFF1452at 78.128 kb on - strand, within GFF1452at 78.478 kb on + strand, within GFF1452at 78.478 kb on + strand, within GFF1452at 78.479 kb on - strand, within GFF1452at 78.479 kb on - strand, within GFF1452at 78.479 kb on - strand, within GFF1452at 78.479 kb on - strand, within GFF1452at 78.514 kb on + strand, within GFF1452at 78.515 kb on - strand, within GFF1452at 78.673 kb on + strand, within GFF1452at 78.674 kb on - strand, within GFF1452at 79.409 kb on + strand, within GFF1452at 79.409 kb on + strand, within GFF1452at 79.410 kb on - strand, within GFF1452at 79.514 kb on + strand, within GFF1452at 80.030 kb on - strand, within GFF1452at 80.186 kb on - strand, within GFF1452at 80.186 kb on - strand, within GFF1452at 80.344 kb on + strand, within GFF1452at 80.345 kb on - strand, within GFF1452at 80.431 kb on + strand, within GFF1452at 81.107 kb on + strand, within GFF1452at 81.108 kb on - strand, within GFF1452at 81.264 kb on + strandat 81.520 kb on + strandat 81.825 kb on + strandat 81.826 kb on - strandat 81.978 kb on + strandat 81.979 kb on - strandat 82.024 kb on - strandat 82.024 kb on - strandat 82.024 kb on - strandat 82.024 kb on - strandat 82.024 kb on - strandat 82.290 kb on - strand, within GFF1453at 82.290 kb on - strand, within GFF1453at 82.376 kb on + strand, within GFF1453at 82.419 kb on + strand, within GFF1453

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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75,714 + -0.1
75,715 - -0.1
75,728 + +0.8
75,834 - -1.3
75,884 + -0.9
75,885 - +0.8
75,935 + -1.0
75,942 + -0.1
76,001 - -0.8
76,018 + +0.8
76,019 - +0.5
76,023 + -2.0
76,227 + GFF1451 0.31 +0.9
76,228 - GFF1451 0.31 +0.1
76,228 - GFF1451 0.31 -0.4
76,233 + GFF1451 0.32 +0.7
76,233 + GFF1451 0.32 +0.7
76,383 + GFF1451 0.62 +0.6
76,384 - GFF1451 0.62 -1.0
76,384 - GFF1451 0.62 -0.0
76,384 - GFF1451 0.62 -0.3
76,384 - GFF1451 0.62 -0.5
76,476 + GFF1451 0.81 +0.6
76,476 + GFF1451 0.81 +0.5
76,477 - GFF1451 0.81 +0.5
76,477 - GFF1451 0.81 -0.0
76,477 - GFF1451 0.81 -0.3
76,477 - GFF1451 0.81 -1.3
76,601 + +0.4
76,663 + -0.3
76,690 + -0.1
76,723 + +0.2
76,724 - +0.6
76,862 - -1.2
76,862 - -1.8
76,945 + -0.5
76,946 - -0.6
77,056 + +1.6
77,056 + +0.1
77,056 + +0.2
77,056 + -0.0
77,057 - -2.3
77,057 - -0.1
77,057 - -0.3
77,194 + GFF1452 0.10 +0.3
77,195 - GFF1452 0.10 -1.0
77,195 - GFF1452 0.10 -1.5
77,255 - GFF1452 0.12 +0.2
77,255 - GFF1452 0.12 -0.1
77,255 - GFF1452 0.12 -0.4
77,255 - GFF1452 0.12 +1.4
77,287 + GFF1452 0.12 +1.1
77,335 + GFF1452 0.13 -0.0
77,335 + GFF1452 0.13 -1.6
77,336 - GFF1452 0.13 -0.2
77,422 + GFF1452 0.15 -1.2
77,449 + GFF1452 0.15 -1.5
77,449 + GFF1452 0.15 +2.1
77,449 + GFF1452 0.15 -1.4
77,449 + GFF1452 0.15 -0.2
77,449 + GFF1452 0.15 -1.0
77,450 - GFF1452 0.15 +1.1
77,450 - GFF1452 0.15 -2.2
77,450 - GFF1452 0.15 -1.3
77,450 - GFF1452 0.15 -2.1
77,450 - GFF1452 0.15 +0.2
77,455 + GFF1452 0.16 +0.3
77,456 - GFF1452 0.16 +0.7
77,456 - GFF1452 0.16 -0.3
77,599 + GFF1452 0.18 -0.4
77,599 + GFF1452 0.18 +0.1
77,647 + GFF1452 0.19 +0.0
77,648 - GFF1452 0.19 -0.1
77,690 - GFF1452 0.20 +0.1
77,719 + GFF1452 0.21 -0.2
77,719 + GFF1452 0.21 -0.2
77,750 - GFF1452 0.21 -0.8
77,750 - GFF1452 0.21 -1.1
77,842 + GFF1452 0.23 +0.2
77,842 + GFF1452 0.23 -1.0
77,851 + GFF1452 0.24 -0.0
77,905 + GFF1452 0.25 -0.7
77,906 - GFF1452 0.25 -1.8
78,103 + GFF1452 0.29 +0.1
78,103 + GFF1452 0.29 +0.4
78,103 + GFF1452 0.29 -0.8
78,103 + GFF1452 0.29 -0.9
78,103 + GFF1452 0.29 -0.3
78,104 - GFF1452 0.29 -1.2
78,104 - GFF1452 0.29 -0.9
78,104 - GFF1452 0.29 -0.3
78,104 - GFF1452 0.29 -0.0
78,104 - GFF1452 0.29 +0.7
78,104 - GFF1452 0.29 +0.3
78,125 + GFF1452 0.29 -1.8
78,126 - GFF1452 0.29 -0.9
78,127 + GFF1452 0.29 -0.5
78,127 + GFF1452 0.29 +1.2
78,127 + GFF1452 0.29 -0.2
78,127 + GFF1452 0.29 +0.9
78,128 - GFF1452 0.29 +0.5
78,128 - GFF1452 0.29 -0.1
78,478 + GFF1452 0.36 +0.2
78,478 + GFF1452 0.36 -0.4
78,479 - GFF1452 0.36 -1.0
78,479 - GFF1452 0.36 -0.7
78,479 - GFF1452 0.36 -0.2
78,479 - GFF1452 0.36 -0.9
78,514 + GFF1452 0.37 -0.4
78,515 - GFF1452 0.37 -0.6
78,673 + GFF1452 0.40 +0.0
78,674 - GFF1452 0.40 -0.2
79,409 + GFF1452 0.55 +0.6
79,409 + GFF1452 0.55 -0.3
79,410 - GFF1452 0.55 -0.2
79,514 + GFF1452 0.57 +0.2
80,030 - GFF1452 0.67 -1.3
80,186 - GFF1452 0.70 -1.1
80,186 - GFF1452 0.70 +0.7
80,344 + GFF1452 0.74 -0.2
80,345 - GFF1452 0.74 +0.1
80,431 + GFF1452 0.75 -0.8
81,107 + GFF1452 0.89 +0.2
81,108 - GFF1452 0.89 -0.4
81,264 + +0.7
81,520 + -0.3
81,825 + -0.2
81,826 - -0.7
81,978 + -2.5
81,979 - -0.1
82,024 - -0.3
82,024 - +0.3
82,024 - -1.0
82,024 - -0.4
82,024 - +0.3
82,290 - GFF1453 0.11 -1.0
82,290 - GFF1453 0.11 -0.8
82,376 + GFF1453 0.13 -0.3
82,419 + GFF1453 0.15 -0.9

Or see this region's nucleotide sequence