Strain Fitness in Xanthobacter sp. DMC5 around GFF1432

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1431 and GFF1432 are separated by 79 nucleotidesGFF1432 and GFF1433 are separated by 132 nucleotidesGFF1433 and GFF1434 overlap by 4 nucleotides GFF1431 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase, at 55,189 to 56,085 GFF1431 GFF1432 - Pca regulon regulatory protein, at 56,165 to 56,929 GFF1432 GFF1433 - 3-oxoadipate CoA-transferase subunit A, at 57,062 to 57,784 GFF1433 GFF1434 - 3-oxoadipate CoA-transferase subunit B, at 57,781 to 58,464 GFF1434 Position (kb) 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 55.349 kb on + strand, within GFF1431at 55.349 kb on + strand, within GFF1431at 55.350 kb on - strand, within GFF1431at 55.350 kb on - strand, within GFF1431at 55.526 kb on + strand, within GFF1431at 55.677 kb on + strand, within GFF1431at 55.679 kb on + strand, within GFF1431at 55.680 kb on - strand, within GFF1431at 55.680 kb on - strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.775 kb on - strand, within GFF1431at 55.775 kb on - strand, within GFF1431at 55.880 kb on + strand, within GFF1431at 55.880 kb on + strand, within GFF1431at 55.880 kb on + strand, within GFF1431at 55.880 kb on + strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.885 kb on - strand, within GFF1431at 55.968 kb on - strand, within GFF1431at 55.968 kb on - strand, within GFF1431at 56.073 kb on + strandat 56.074 kb on - strandat 56.074 kb on - strandat 56.074 kb on - strandat 56.111 kb on + strandat 56.166 kb on + strandat 56.217 kb on + strandat 56.217 kb on + strandat 56.217 kb on + strandat 56.217 kb on + strandat 56.218 kb on - strandat 56.514 kb on + strand, within GFF1432at 56.514 kb on + strand, within GFF1432at 56.583 kb on + strand, within GFF1432at 56.583 kb on + strand, within GFF1432at 56.584 kb on - strand, within GFF1432at 56.748 kb on + strand, within GFF1432at 56.749 kb on - strand, within GFF1432at 56.757 kb on + strand, within GFF1432at 56.816 kb on - strand, within GFF1432at 57.345 kb on - strand, within GFF1433at 57.345 kb on - strand, within GFF1433at 57.434 kb on + strand, within GFF1433at 57.434 kb on + strand, within GFF1433at 57.435 kb on - strand, within GFF1433at 57.449 kb on + strand, within GFF1433at 57.503 kb on + strand, within GFF1433at 57.503 kb on + strand, within GFF1433at 57.504 kb on - strand, within GFF1433at 57.504 kb on - strand, within GFF1433at 57.581 kb on + strand, within GFF1433at 57.581 kb on + strand, within GFF1433at 57.776 kb on + strandat 57.776 kb on + strandat 57.776 kb on + strandat 57.777 kb on - strandat 57.777 kb on - strandat 57.798 kb on + strandat 57.859 kb on + strand, within GFF1434at 57.859 kb on + strand, within GFF1434at 57.859 kb on + strand, within GFF1434at 57.859 kb on + strand, within GFF1434at 57.860 kb on - strand, within GFF1434at 57.928 kb on + strand, within GFF1434at 57.928 kb on + strand, within GFF1434at 57.929 kb on - strand, within GFF1434at 57.929 kb on - strand, within GFF1434

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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55,349 + GFF1431 0.18 -1.3
55,349 + GFF1431 0.18 -0.3
55,350 - GFF1431 0.18 +0.9
55,350 - GFF1431 0.18 +0.3
55,526 + GFF1431 0.38 +0.1
55,677 + GFF1431 0.54 +0.6
55,679 + GFF1431 0.55 +0.6
55,680 - GFF1431 0.55 +0.7
55,680 - GFF1431 0.55 +0.1
55,774 + GFF1431 0.65 +0.5
55,774 + GFF1431 0.65 +0.1
55,774 + GFF1431 0.65 -2.3
55,774 + GFF1431 0.65 +1.3
55,774 + GFF1431 0.65 +0.2
55,775 - GFF1431 0.65 +1.2
55,775 - GFF1431 0.65 -0.0
55,880 + GFF1431 0.77 -0.4
55,880 + GFF1431 0.77 -0.0
55,880 + GFF1431 0.77 +1.8
55,880 + GFF1431 0.77 -0.4
55,881 - GFF1431 0.77 -1.5
55,881 - GFF1431 0.77 +0.8
55,881 - GFF1431 0.77 +0.7
55,881 - GFF1431 0.77 -1.6
55,881 - GFF1431 0.77 -1.0
55,885 - GFF1431 0.78 -1.7
55,968 - GFF1431 0.87 -1.9
55,968 - GFF1431 0.87 -0.8
56,073 + -0.6
56,074 - +1.2
56,074 - -0.4
56,074 - -0.4
56,111 + -1.3
56,166 + -0.6
56,217 + +1.4
56,217 + +0.5
56,217 + -0.4
56,217 + +0.3
56,218 - +0.1
56,514 + GFF1432 0.46 +0.3
56,514 + GFF1432 0.46 -1.1
56,583 + GFF1432 0.55 -0.3
56,583 + GFF1432 0.55 -1.0
56,584 - GFF1432 0.55 +0.5
56,748 + GFF1432 0.76 +0.1
56,749 - GFF1432 0.76 +0.5
56,757 + GFF1432 0.77 -0.5
56,816 - GFF1432 0.85 +0.1
57,345 - GFF1433 0.39 +0.5
57,345 - GFF1433 0.39 +0.1
57,434 + GFF1433 0.51 +0.7
57,434 + GFF1433 0.51 -0.4
57,435 - GFF1433 0.52 +0.2
57,449 + GFF1433 0.54 -0.4
57,503 + GFF1433 0.61 +0.1
57,503 + GFF1433 0.61 -0.3
57,504 - GFF1433 0.61 -2.3
57,504 - GFF1433 0.61 +0.2
57,581 + GFF1433 0.72 +0.6
57,581 + GFF1433 0.72 -0.8
57,776 + +0.2
57,776 + +0.3
57,776 + +0.7
57,777 - +0.3
57,777 - +0.2
57,798 + +0.7
57,859 + GFF1434 0.11 +0.0
57,859 + GFF1434 0.11 -0.4
57,859 + GFF1434 0.11 +0.3
57,859 + GFF1434 0.11 +0.1
57,860 - GFF1434 0.12 +0.5
57,928 + GFF1434 0.21 -1.4
57,928 + GFF1434 0.21 -0.3
57,929 - GFF1434 0.22 -0.4
57,929 - GFF1434 0.22 +0.1

Or see this region's nucleotide sequence