Strain Fitness in Xanthobacter sp. DMC5 around GFF1430

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1428 and GFF1429 overlap by 1 nucleotidesGFF1429 and GFF1430 are separated by 22 nucleotidesGFF1430 and GFF1431 are separated by 263 nucleotides GFF1428 - Acetate CoA-transferase subunit alpha, at 51,152 to 51,805 GFF1428 GFF1429 - Butyrate--acetoacetate CoA-transferase subunit B, at 51,805 to 52,494 GFF1429 GFF1430 - hypothetical protein, at 52,517 to 54,925 GFF1430 GFF1431 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase, at 55,189 to 56,085 GFF1431 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 51.521 kb on - strand, within GFF1428at 51.521 kb on - strand, within GFF1428at 51.569 kb on + strand, within GFF1428at 51.569 kb on + strand, within GFF1428at 51.570 kb on - strand, within GFF1428at 51.629 kb on + strand, within GFF1428at 51.630 kb on - strand, within GFF1428at 51.630 kb on - strand, within GFF1428at 51.630 kb on - strand, within GFF1428at 51.630 kb on - strand, within GFF1428at 51.648 kb on - strand, within GFF1428at 51.940 kb on + strand, within GFF1429at 51.940 kb on + strand, within GFF1429at 51.941 kb on - strand, within GFF1429at 51.955 kb on + strand, within GFF1429at 51.955 kb on + strand, within GFF1429at 51.955 kb on + strand, within GFF1429at 51.955 kb on + strand, within GFF1429at 51.964 kb on + strand, within GFF1429at 51.965 kb on - strand, within GFF1429at 52.224 kb on + strand, within GFF1429at 52.740 kb on + strandat 52.740 kb on + strandat 52.740 kb on + strandat 52.741 kb on - strandat 52.741 kb on - strandat 52.741 kb on - strandat 52.741 kb on - strandat 52.741 kb on - strandat 53.037 kb on + strand, within GFF1430at 53.037 kb on + strand, within GFF1430at 53.037 kb on + strand, within GFF1430at 53.037 kb on + strand, within GFF1430at 53.038 kb on - strand, within GFF1430at 53.061 kb on + strand, within GFF1430at 53.328 kb on + strand, within GFF1430at 53.328 kb on + strand, within GFF1430at 53.328 kb on + strand, within GFF1430at 53.328 kb on + strand, within GFF1430at 53.493 kb on + strand, within GFF1430at 53.493 kb on + strand, within GFF1430at 53.613 kb on + strand, within GFF1430at 53.613 kb on + strand, within GFF1430at 53.614 kb on - strand, within GFF1430at 53.614 kb on - strand, within GFF1430at 53.614 kb on - strand, within GFF1430at 53.614 kb on - strand, within GFF1430at 53.658 kb on + strand, within GFF1430at 53.928 kb on + strand, within GFF1430at 54.012 kb on + strand, within GFF1430at 54.013 kb on - strand, within GFF1430at 54.063 kb on + strand, within GFF1430at 54.063 kb on + strand, within GFF1430at 54.063 kb on + strand, within GFF1430at 54.064 kb on - strand, within GFF1430at 54.238 kb on - strand, within GFF1430at 54.238 kb on - strand, within GFF1430at 54.238 kb on - strand, within GFF1430at 54.238 kb on - strand, within GFF1430at 54.238 kb on - strand, within GFF1430at 54.238 kb on - strand, within GFF1430at 54.319 kb on - strand, within GFF1430at 54.417 kb on + strand, within GFF1430at 54.418 kb on - strand, within GFF1430at 54.467 kb on - strand, within GFF1430at 54.477 kb on + strand, within GFF1430at 54.477 kb on + strand, within GFF1430at 54.477 kb on + strand, within GFF1430at 54.477 kb on + strand, within GFF1430at 54.477 kb on + strand, within GFF1430at 54.478 kb on - strand, within GFF1430at 54.478 kb on - strand, within GFF1430at 54.478 kb on - strand, within GFF1430at 54.478 kb on - strand, within GFF1430at 54.478 kb on - strand, within GFF1430at 54.522 kb on + strand, within GFF1430at 54.528 kb on + strand, within GFF1430at 54.528 kb on + strand, within GFF1430at 54.722 kb on - strandat 54.826 kb on + strandat 54.872 kb on + strandat 54.873 kb on - strandat 54.951 kb on + strandat 54.952 kb on - strandat 55.002 kb on + strandat 55.022 kb on - strandat 55.022 kb on - strandat 55.044 kb on + strandat 55.140 kb on - strandat 55.349 kb on + strand, within GFF1431at 55.349 kb on + strand, within GFF1431at 55.350 kb on - strand, within GFF1431at 55.350 kb on - strand, within GFF1431at 55.526 kb on + strand, within GFF1431at 55.677 kb on + strand, within GFF1431at 55.679 kb on + strand, within GFF1431at 55.680 kb on - strand, within GFF1431at 55.680 kb on - strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.774 kb on + strand, within GFF1431at 55.775 kb on - strand, within GFF1431at 55.775 kb on - strand, within GFF1431at 55.880 kb on + strand, within GFF1431at 55.880 kb on + strand, within GFF1431at 55.880 kb on + strand, within GFF1431at 55.880 kb on + strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.881 kb on - strand, within GFF1431at 55.885 kb on - strand, within GFF1431

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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51,521 - GFF1428 0.56 -0.6
51,521 - GFF1428 0.56 -0.3
51,569 + GFF1428 0.64 +0.5
51,569 + GFF1428 0.64 +0.3
51,570 - GFF1428 0.64 -0.4
51,629 + GFF1428 0.73 -0.7
51,630 - GFF1428 0.73 +0.4
51,630 - GFF1428 0.73 -1.0
51,630 - GFF1428 0.73 -0.5
51,630 - GFF1428 0.73 -0.0
51,648 - GFF1428 0.76 +0.3
51,940 + GFF1429 0.20 -0.5
51,940 + GFF1429 0.20 +0.4
51,941 - GFF1429 0.20 +0.3
51,955 + GFF1429 0.22 +0.7
51,955 + GFF1429 0.22 -0.8
51,955 + GFF1429 0.22 +0.7
51,955 + GFF1429 0.22 +1.1
51,964 + GFF1429 0.23 -1.2
51,965 - GFF1429 0.23 -0.6
52,224 + GFF1429 0.61 +0.1
52,740 + -1.8
52,740 + +0.1
52,740 + -0.4
52,741 - +1.2
52,741 - -1.1
52,741 - -0.8
52,741 - +0.9
52,741 - +1.0
53,037 + GFF1430 0.22 -0.3
53,037 + GFF1430 0.22 +1.2
53,037 + GFF1430 0.22 -0.6
53,037 + GFF1430 0.22 -0.1
53,038 - GFF1430 0.22 +1.4
53,061 + GFF1430 0.23 +0.1
53,328 + GFF1430 0.34 -1.2
53,328 + GFF1430 0.34 +0.5
53,328 + GFF1430 0.34 -0.9
53,328 + GFF1430 0.34 -0.1
53,493 + GFF1430 0.41 -1.6
53,493 + GFF1430 0.41 -0.1
53,613 + GFF1430 0.45 +1.1
53,613 + GFF1430 0.45 +0.4
53,614 - GFF1430 0.46 +0.1
53,614 - GFF1430 0.46 +0.2
53,614 - GFF1430 0.46 -0.4
53,614 - GFF1430 0.46 +0.6
53,658 + GFF1430 0.47 +0.4
53,928 + GFF1430 0.59 +0.4
54,012 + GFF1430 0.62 -1.0
54,013 - GFF1430 0.62 -0.3
54,063 + GFF1430 0.64 -0.1
54,063 + GFF1430 0.64 -0.5
54,063 + GFF1430 0.64 -0.3
54,064 - GFF1430 0.64 +1.3
54,238 - GFF1430 0.71 +0.4
54,238 - GFF1430 0.71 +0.8
54,238 - GFF1430 0.71 -0.4
54,238 - GFF1430 0.71 -2.1
54,238 - GFF1430 0.71 +0.2
54,238 - GFF1430 0.71 +1.3
54,319 - GFF1430 0.75 -0.5
54,417 + GFF1430 0.79 +0.9
54,418 - GFF1430 0.79 -0.3
54,467 - GFF1430 0.81 +0.1
54,477 + GFF1430 0.81 -0.7
54,477 + GFF1430 0.81 +0.1
54,477 + GFF1430 0.81 +0.4
54,477 + GFF1430 0.81 +0.8
54,477 + GFF1430 0.81 -0.1
54,478 - GFF1430 0.81 +0.4
54,478 - GFF1430 0.81 +0.4
54,478 - GFF1430 0.81 +0.8
54,478 - GFF1430 0.81 +1.2
54,478 - GFF1430 0.81 -1.5
54,522 + GFF1430 0.83 +0.2
54,528 + GFF1430 0.83 +0.3
54,528 + GFF1430 0.83 -1.1
54,722 - +0.2
54,826 + -0.5
54,872 + -0.9
54,873 - -0.2
54,951 + -1.3
54,952 - -0.8
55,002 + +0.7
55,022 - -0.4
55,022 - +0.1
55,044 + -0.2
55,140 - +0.5
55,349 + GFF1431 0.18 -1.3
55,349 + GFF1431 0.18 -0.3
55,350 - GFF1431 0.18 +0.9
55,350 - GFF1431 0.18 +0.3
55,526 + GFF1431 0.38 +0.1
55,677 + GFF1431 0.54 +0.6
55,679 + GFF1431 0.55 +0.6
55,680 - GFF1431 0.55 +0.7
55,680 - GFF1431 0.55 +0.1
55,774 + GFF1431 0.65 +0.5
55,774 + GFF1431 0.65 +0.1
55,774 + GFF1431 0.65 -2.3
55,774 + GFF1431 0.65 +1.3
55,774 + GFF1431 0.65 +0.2
55,775 - GFF1431 0.65 +1.2
55,775 - GFF1431 0.65 -0.0
55,880 + GFF1431 0.77 -0.4
55,880 + GFF1431 0.77 -0.0
55,880 + GFF1431 0.77 +1.8
55,880 + GFF1431 0.77 -0.4
55,881 - GFF1431 0.77 -1.5
55,881 - GFF1431 0.77 +0.8
55,881 - GFF1431 0.77 +0.7
55,881 - GFF1431 0.77 -1.6
55,881 - GFF1431 0.77 -1.0
55,885 - GFF1431 0.78 -1.7

Or see this region's nucleotide sequence