Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1412 and GFF1413 are separated by 69 nucleotides GFF1413 and GFF1414 are separated by 164 nucleotides GFF1414 and GFF1415 are separated by 242 nucleotides
GFF1412 - hypothetical protein, at 34,111 to 35,241
GFF1412
GFF1413 - D-amino acid dehydrogenase 1, at 35,311 to 36,576
GFF1413
GFF1414 - Leucine-responsive regulatory protein, at 36,741 to 37,199
GFF1414
GFF1415 - hypothetical protein, at 37,442 to 37,681
GFF1415
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.620 kb on - strand, within GFF1412 at 34.620 kb on - strand, within GFF1412 at 34.622 kb on + strand, within GFF1412 at 34.622 kb on + strand, within GFF1412 at 34.622 kb on + strand, within GFF1412 at 34.623 kb on - strand, within GFF1412 at 34.673 kb on + strand, within GFF1412 at 34.673 kb on + strand, within GFF1412 at 34.674 kb on - strand, within GFF1412 at 34.674 kb on - strand, within GFF1412 at 34.674 kb on - strand, within GFF1412 at 34.674 kb on - strand, within GFF1412 at 34.735 kb on + strand, within GFF1412 at 34.954 kb on + strand, within GFF1412 at 34.954 kb on + strand, within GFF1412 at 34.955 kb on - strand, within GFF1412 at 34.955 kb on - strand, within GFF1412 at 35.045 kb on + strand, within GFF1412 at 35.368 kb on - strand at 35.682 kb on - strand, within GFF1413 at 35.808 kb on - strand, within GFF1413 at 35.829 kb on - strand, within GFF1413 at 35.829 kb on - strand, within GFF1413 at 35.919 kb on - strand, within GFF1413 at 36.087 kb on - strand, within GFF1413 at 36.188 kb on + strand, within GFF1413 at 36.189 kb on - strand, within GFF1413 at 36.425 kb on + strand, within GFF1413 at 36.525 kb on - strand at 36.525 kb on - strand at 36.528 kb on - strand at 36.897 kb on + strand, within GFF1414 at 36.898 kb on - strand, within GFF1414 at 37.059 kb on + strand, within GFF1414 at 37.059 kb on + strand, within GFF1414 at 37.060 kb on - strand, within GFF1414 at 37.060 kb on - strand, within GFF1414 at 37.060 kb on - strand, within GFF1414
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 34,620 - GFF1412 0.45 +0.4 34,620 - GFF1412 0.45 -0.5 34,622 + GFF1412 0.45 -0.6 34,622 + GFF1412 0.45 +1.1 34,622 + GFF1412 0.45 -1.4 34,623 - GFF1412 0.45 -0.9 34,673 + GFF1412 0.50 -1.0 34,673 + GFF1412 0.50 -0.8 34,674 - GFF1412 0.50 +0.5 34,674 - GFF1412 0.50 +2.1 34,674 - GFF1412 0.50 -0.8 34,674 - GFF1412 0.50 -0.3 34,735 + GFF1412 0.55 -0.3 34,954 + GFF1412 0.75 -1.6 34,954 + GFF1412 0.75 -0.0 34,955 - GFF1412 0.75 -0.8 34,955 - GFF1412 0.75 -0.4 35,045 + GFF1412 0.83 -0.1 35,368 - +0.1 35,682 - GFF1413 0.29 -1.4 35,808 - GFF1413 0.39 +0.1 35,829 - GFF1413 0.41 -2.2 35,829 - GFF1413 0.41 -0.9 35,919 - GFF1413 0.48 +1.4 36,087 - GFF1413 0.61 +0.8 36,188 + GFF1413 0.69 +1.2 36,189 - GFF1413 0.69 -0.5 36,425 + GFF1413 0.88 -1.5 36,525 - -1.4 36,525 - +0.8 36,528 - +1.5 36,897 + GFF1414 0.34 +0.1 36,898 - GFF1414 0.34 -0.2 37,059 + GFF1414 0.69 +0.2 37,059 + GFF1414 0.69 -1.3 37,060 - GFF1414 0.69 -0.9 37,060 - GFF1414 0.69 +0.9 37,060 - GFF1414 0.69 +0.1
Or see this region's nucleotide sequence