Strain Fitness in Xanthobacter sp. DMC5 around GFF1408

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1407 and GFF1408 overlap by 4 nucleotidesGFF1408 and GFF1409 are separated by 39 nucleotidesGFF1409 and GFF1410 are separated by 45 nucleotides GFF1407 - Multidrug resistance protein MdtA, at 25,607 to 26,773 GFF1407 GFF1408 - Multidrug resistance protein MdtB, at 26,770 to 29,907 GFF1408 GFF1409 - Putative monooxygenase, at 29,947 to 30,279 GFF1409 GFF1410 - hypothetical protein, at 30,325 to 31,344 GFF1410 Position (kb) 26 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 25.851 kb on + strand, within GFF1407at 25.852 kb on - strand, within GFF1407at 25.852 kb on - strand, within GFF1407at 25.991 kb on + strand, within GFF1407at 26.000 kb on + strand, within GFF1407at 26.000 kb on + strand, within GFF1407at 26.000 kb on + strand, within GFF1407at 26.000 kb on + strand, within GFF1407at 26.001 kb on - strand, within GFF1407at 26.072 kb on + strand, within GFF1407at 26.073 kb on - strand, within GFF1407at 26.073 kb on - strand, within GFF1407at 26.132 kb on + strand, within GFF1407at 26.132 kb on + strand, within GFF1407at 26.132 kb on + strand, within GFF1407at 26.133 kb on - strand, within GFF1407at 26.555 kb on + strand, within GFF1407at 26.555 kb on + strand, within GFF1407at 26.555 kb on + strand, within GFF1407at 26.555 kb on + strand, within GFF1407at 26.555 kb on + strand, within GFF1407at 26.555 kb on + strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.556 kb on - strand, within GFF1407at 26.561 kb on + strand, within GFF1407at 26.562 kb on - strand, within GFF1407at 26.562 kb on - strand, within GFF1407at 26.562 kb on - strand, within GFF1407at 26.562 kb on - strand, within GFF1407at 26.562 kb on - strand, within GFF1407at 26.562 kb on - strand, within GFF1407at 26.562 kb on - strand, within GFF1407at 26.684 kb on + strandat 26.684 kb on + strandat 26.685 kb on - strandat 26.685 kb on - strandat 26.685 kb on - strandat 26.757 kb on + strandat 26.758 kb on - strandat 26.854 kb on + strandat 26.901 kb on + strandat 26.901 kb on + strandat 27.214 kb on + strand, within GFF1408at 27.215 kb on - strand, within GFF1408at 27.457 kb on + strand, within GFF1408at 27.457 kb on + strand, within GFF1408at 27.457 kb on + strand, within GFF1408at 27.457 kb on + strand, within GFF1408at 27.458 kb on - strand, within GFF1408at 27.511 kb on + strand, within GFF1408at 27.511 kb on + strand, within GFF1408at 27.512 kb on - strand, within GFF1408at 27.901 kb on + strand, within GFF1408at 27.901 kb on + strand, within GFF1408at 27.901 kb on + strand, within GFF1408at 27.901 kb on + strand, within GFF1408at 27.901 kb on + strand, within GFF1408at 27.901 kb on + strand, within GFF1408at 27.901 kb on + strand, within GFF1408at 27.901 kb on + strand, within GFF1408at 27.902 kb on - strand, within GFF1408at 27.902 kb on - strand, within GFF1408at 27.902 kb on - strand, within GFF1408at 27.902 kb on - strand, within GFF1408at 27.902 kb on - strand, within GFF1408at 27.902 kb on - strand, within GFF1408at 27.902 kb on - strand, within GFF1408at 27.913 kb on + strand, within GFF1408at 27.914 kb on - strand, within GFF1408at 28.000 kb on + strand, within GFF1408at 28.001 kb on - strand, within GFF1408at 28.248 kb on - strand, within GFF1408at 28.273 kb on + strand, within GFF1408at 28.273 kb on + strand, within GFF1408at 28.273 kb on + strand, within GFF1408at 28.274 kb on - strand, within GFF1408at 28.274 kb on - strand, within GFF1408at 28.274 kb on - strand, within GFF1408at 28.274 kb on - strand, within GFF1408at 28.316 kb on - strand, within GFF1408at 28.402 kb on + strand, within GFF1408at 28.402 kb on + strand, within GFF1408at 28.403 kb on - strand, within GFF1408at 28.600 kb on - strand, within GFF1408at 28.709 kb on + strand, within GFF1408at 28.765 kb on + strand, within GFF1408at 28.766 kb on - strand, within GFF1408at 28.771 kb on + strand, within GFF1408at 28.771 kb on + strand, within GFF1408at 28.771 kb on + strand, within GFF1408at 28.771 kb on + strand, within GFF1408at 28.771 kb on + strand, within GFF1408at 28.771 kb on + strand, within GFF1408at 28.772 kb on - strand, within GFF1408at 28.772 kb on - strand, within GFF1408at 28.772 kb on - strand, within GFF1408at 28.772 kb on - strand, within GFF1408at 28.772 kb on - strand, within GFF1408at 28.772 kb on - strand, within GFF1408at 28.966 kb on + strand, within GFF1408at 28.999 kb on + strand, within GFF1408at 28.999 kb on + strand, within GFF1408at 29.000 kb on - strand, within GFF1408at 29.021 kb on - strand, within GFF1408at 29.021 kb on - strand, within GFF1408at 29.083 kb on + strand, within GFF1408at 29.083 kb on + strand, within GFF1408at 29.083 kb on + strand, within GFF1408at 29.083 kb on + strand, within GFF1408at 29.083 kb on + strand, within GFF1408at 29.084 kb on - strand, within GFF1408at 29.084 kb on - strand, within GFF1408at 29.350 kb on + strand, within GFF1408at 29.380 kb on + strand, within GFF1408at 29.381 kb on - strand, within GFF1408at 29.381 kb on - strand, within GFF1408at 29.401 kb on + strand, within GFF1408at 29.401 kb on + strand, within GFF1408at 29.402 kb on - strand, within GFF1408at 29.402 kb on - strand, within GFF1408at 29.404 kb on - strand, within GFF1408at 29.428 kb on + strand, within GFF1408at 29.476 kb on + strand, within GFF1408at 29.476 kb on + strand, within GFF1408at 29.477 kb on - strand, within GFF1408at 29.617 kb on + strandat 29.617 kb on + strandat 29.618 kb on - strandat 29.782 kb on + strandat 29.782 kb on + strandat 29.782 kb on + strandat 29.783 kb on - strandat 29.800 kb on + strandat 29.800 kb on + strandat 29.801 kb on - strandat 29.801 kb on - strandat 29.801 kb on - strandat 29.801 kb on - strandat 29.807 kb on - strandat 29.807 kb on - strandat 29.807 kb on - strandat 29.807 kb on - strandat 29.807 kb on - strandat 29.807 kb on - strandat 30.154 kb on + strand, within GFF1409at 30.154 kb on + strand, within GFF1409at 30.154 kb on + strand, within GFF1409at 30.154 kb on + strand, within GFF1409at 30.154 kb on + strand, within GFF1409at 30.154 kb on + strand, within GFF1409at 30.155 kb on - strand, within GFF1409at 30.155 kb on - strand, within GFF1409at 30.155 kb on - strand, within GFF1409at 30.155 kb on - strand, within GFF1409at 30.208 kb on + strand, within GFF1409at 30.208 kb on + strand, within GFF1409at 30.208 kb on + strand, within GFF1409at 30.208 kb on + strand, within GFF1409at 30.209 kb on - strand, within GFF1409at 30.209 kb on - strand, within GFF1409at 30.251 kb on + strandat 30.285 kb on + strandat 30.285 kb on + strandat 30.286 kb on - strandat 30.310 kb on - strandat 30.310 kb on - strandat 30.570 kb on - strand, within GFF1410

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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25,851 + GFF1407 0.21 +0.2
25,852 - GFF1407 0.21 -0.6
25,852 - GFF1407 0.21 +0.2
25,991 + GFF1407 0.33 -0.9
26,000 + GFF1407 0.34 -0.9
26,000 + GFF1407 0.34 +0.3
26,000 + GFF1407 0.34 -0.0
26,000 + GFF1407 0.34 +0.4
26,001 - GFF1407 0.34 +1.5
26,072 + GFF1407 0.40 -2.0
26,073 - GFF1407 0.40 +0.3
26,073 - GFF1407 0.40 +0.2
26,132 + GFF1407 0.45 -0.3
26,132 + GFF1407 0.45 -0.1
26,132 + GFF1407 0.45 -0.3
26,133 - GFF1407 0.45 +0.2
26,555 + GFF1407 0.81 -0.1
26,555 + GFF1407 0.81 -0.2
26,555 + GFF1407 0.81 -0.1
26,555 + GFF1407 0.81 -0.3
26,555 + GFF1407 0.81 -0.5
26,555 + GFF1407 0.81 +0.5
26,556 - GFF1407 0.81 -0.9
26,556 - GFF1407 0.81 -0.1
26,556 - GFF1407 0.81 +0.2
26,556 - GFF1407 0.81 -0.0
26,556 - GFF1407 0.81 -0.1
26,556 - GFF1407 0.81 +0.1
26,556 - GFF1407 0.81 +1.1
26,556 - GFF1407 0.81 -1.8
26,556 - GFF1407 0.81 -1.1
26,556 - GFF1407 0.81 +0.2
26,556 - GFF1407 0.81 +0.6
26,561 + GFF1407 0.82 -0.3
26,562 - GFF1407 0.82 -2.1
26,562 - GFF1407 0.82 -1.1
26,562 - GFF1407 0.82 +0.6
26,562 - GFF1407 0.82 -0.8
26,562 - GFF1407 0.82 +1.5
26,562 - GFF1407 0.82 +0.4
26,562 - GFF1407 0.82 +1.5
26,684 + -1.8
26,684 + +0.2
26,685 - -0.5
26,685 - +0.2
26,685 - +0.0
26,757 + +1.0
26,758 - +0.3
26,854 + -0.5
26,901 + +0.6
26,901 + +0.2
27,214 + GFF1408 0.14 +0.1
27,215 - GFF1408 0.14 -1.8
27,457 + GFF1408 0.22 +0.5
27,457 + GFF1408 0.22 +0.7
27,457 + GFF1408 0.22 -1.8
27,457 + GFF1408 0.22 -0.6
27,458 - GFF1408 0.22 +0.7
27,511 + GFF1408 0.24 -0.8
27,511 + GFF1408 0.24 +0.1
27,512 - GFF1408 0.24 +0.2
27,901 + GFF1408 0.36 +0.5
27,901 + GFF1408 0.36 +1.1
27,901 + GFF1408 0.36 +1.8
27,901 + GFF1408 0.36 -0.3
27,901 + GFF1408 0.36 -0.2
27,901 + GFF1408 0.36 +0.7
27,901 + GFF1408 0.36 -0.0
27,901 + GFF1408 0.36 -0.6
27,902 - GFF1408 0.36 +1.0
27,902 - GFF1408 0.36 -0.1
27,902 - GFF1408 0.36 -0.7
27,902 - GFF1408 0.36 -2.6
27,902 - GFF1408 0.36 +0.2
27,902 - GFF1408 0.36 -0.2
27,902 - GFF1408 0.36 +0.0
27,913 + GFF1408 0.36 -0.7
27,914 - GFF1408 0.36 +0.7
28,000 + GFF1408 0.39 -0.5
28,001 - GFF1408 0.39 -0.5
28,248 - GFF1408 0.47 -2.3
28,273 + GFF1408 0.48 +0.1
28,273 + GFF1408 0.48 -1.3
28,273 + GFF1408 0.48 -2.0
28,274 - GFF1408 0.48 -0.6
28,274 - GFF1408 0.48 +0.6
28,274 - GFF1408 0.48 +0.1
28,274 - GFF1408 0.48 -0.7
28,316 - GFF1408 0.49 +0.2
28,402 + GFF1408 0.52 +0.7
28,402 + GFF1408 0.52 -0.1
28,403 - GFF1408 0.52 -0.3
28,600 - GFF1408 0.58 +0.5
28,709 + GFF1408 0.62 +0.7
28,765 + GFF1408 0.64 -0.2
28,766 - GFF1408 0.64 +0.8
28,771 + GFF1408 0.64 -0.5
28,771 + GFF1408 0.64 +0.4
28,771 + GFF1408 0.64 -0.1
28,771 + GFF1408 0.64 -0.8
28,771 + GFF1408 0.64 -0.6
28,771 + GFF1408 0.64 +0.2
28,772 - GFF1408 0.64 -0.6
28,772 - GFF1408 0.64 +1.5
28,772 - GFF1408 0.64 -0.9
28,772 - GFF1408 0.64 -0.0
28,772 - GFF1408 0.64 +1.2
28,772 - GFF1408 0.64 +0.6
28,966 + GFF1408 0.70 -0.5
28,999 + GFF1408 0.71 -0.4
28,999 + GFF1408 0.71 +0.3
29,000 - GFF1408 0.71 +0.7
29,021 - GFF1408 0.72 -0.6
29,021 - GFF1408 0.72 +0.7
29,083 + GFF1408 0.74 +0.8
29,083 + GFF1408 0.74 -0.2
29,083 + GFF1408 0.74 -0.8
29,083 + GFF1408 0.74 -0.0
29,083 + GFF1408 0.74 -0.3
29,084 - GFF1408 0.74 -1.1
29,084 - GFF1408 0.74 +0.4
29,350 + GFF1408 0.82 +0.8
29,380 + GFF1408 0.83 +0.3
29,381 - GFF1408 0.83 -0.4
29,381 - GFF1408 0.83 +0.4
29,401 + GFF1408 0.84 -0.9
29,401 + GFF1408 0.84 -0.0
29,402 - GFF1408 0.84 +0.1
29,402 - GFF1408 0.84 -0.0
29,404 - GFF1408 0.84 +0.5
29,428 + GFF1408 0.85 +1.1
29,476 + GFF1408 0.86 +0.6
29,476 + GFF1408 0.86 +1.0
29,477 - GFF1408 0.86 +0.6
29,617 + -1.5
29,617 + -1.2
29,618 - -0.1
29,782 + -0.6
29,782 + -0.8
29,782 + +2.1
29,783 - -1.1
29,800 + -0.3
29,800 + -0.9
29,801 - -0.2
29,801 - -0.8
29,801 - -0.4
29,801 - -0.3
29,807 - +0.1
29,807 - -0.3
29,807 - +1.2
29,807 - -0.6
29,807 - -0.1
29,807 - +1.4
30,154 + GFF1409 0.62 +1.0
30,154 + GFF1409 0.62 -1.1
30,154 + GFF1409 0.62 +1.4
30,154 + GFF1409 0.62 -1.1
30,154 + GFF1409 0.62 +0.8
30,154 + GFF1409 0.62 -0.6
30,155 - GFF1409 0.62 -1.8
30,155 - GFF1409 0.62 +0.3
30,155 - GFF1409 0.62 +0.1
30,155 - GFF1409 0.62 -0.6
30,208 + GFF1409 0.78 -1.2
30,208 + GFF1409 0.78 -0.6
30,208 + GFF1409 0.78 -0.3
30,208 + GFF1409 0.78 +0.5
30,209 - GFF1409 0.79 +0.0
30,209 - GFF1409 0.79 -0.8
30,251 + -0.9
30,285 + -0.6
30,285 + -0.2
30,286 - +0.7
30,310 - +1.1
30,310 - +0.2
30,570 - GFF1410 0.24 -0.3

Or see this region's nucleotide sequence