Strain Fitness in Xanthobacter sp. DMC5 around GFF1403

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1401 and GFF1402 are separated by 68 nucleotidesGFF1402 and GFF1403 are separated by 193 nucleotidesGFF1403 and GFF1404 are separated by 205 nucleotidesGFF1404 and GFF1405 overlap by 4 nucleotides GFF1401 - hypothetical protein, at 21,494 to 22,120 GFF1401 GFF1402 - hypothetical protein, at 22,189 to 22,707 GFF1402 GFF1403 - hypothetical protein, at 22,901 to 23,596 GFF1403 GFF1404 - hypothetical protein, at 23,802 to 24,311 GFF1404 GFF1405 - hypothetical protein, at 24,308 to 24,778 GFF1405 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 22.078 kb on - strandat 22.078 kb on - strandat 22.078 kb on - strandat 22.190 kb on + strandat 22.190 kb on + strandat 22.240 kb on + strandat 22.240 kb on + strandat 22.304 kb on + strand, within GFF1402at 22.304 kb on + strand, within GFF1402at 22.304 kb on + strand, within GFF1402at 22.304 kb on + strand, within GFF1402at 22.304 kb on + strand, within GFF1402at 22.305 kb on - strand, within GFF1402at 22.305 kb on - strand, within GFF1402at 22.305 kb on - strand, within GFF1402at 22.305 kb on - strand, within GFF1402at 22.305 kb on - strand, within GFF1402at 22.414 kb on + strand, within GFF1402at 22.414 kb on + strand, within GFF1402at 22.414 kb on + strand, within GFF1402at 22.414 kb on + strand, within GFF1402at 22.414 kb on + strand, within GFF1402at 22.414 kb on + strand, within GFF1402at 22.414 kb on + strand, within GFF1402at 22.414 kb on + strand, within GFF1402at 22.415 kb on - strand, within GFF1402at 22.415 kb on - strand, within GFF1402at 22.415 kb on - strand, within GFF1402at 22.415 kb on - strand, within GFF1402at 22.503 kb on - strand, within GFF1402at 22.581 kb on - strand, within GFF1402at 22.741 kb on + strandat 22.742 kb on - strandat 22.757 kb on - strandat 22.793 kb on - strandat 23.286 kb on + strand, within GFF1403at 23.286 kb on + strand, within GFF1403at 23.286 kb on + strand, within GFF1403at 23.286 kb on + strand, within GFF1403at 23.286 kb on + strand, within GFF1403at 23.287 kb on - strand, within GFF1403at 23.287 kb on - strand, within GFF1403at 23.287 kb on - strand, within GFF1403at 23.287 kb on - strand, within GFF1403at 23.287 kb on - strand, within GFF1403at 23.287 kb on - strand, within GFF1403at 23.394 kb on + strand, within GFF1403at 23.394 kb on + strand, within GFF1403at 23.395 kb on - strand, within GFF1403at 23.395 kb on - strand, within GFF1403at 23.413 kb on - strand, within GFF1403at 23.451 kb on - strand, within GFF1403at 23.602 kb on + strandat 23.603 kb on - strandat 23.603 kb on - strandat 23.665 kb on - strandat 23.746 kb on + strandat 23.746 kb on + strandat 23.749 kb on - strandat 24.176 kb on + strand, within GFF1404at 24.176 kb on + strand, within GFF1404at 24.176 kb on + strand, within GFF1404at 24.177 kb on - strand, within GFF1404at 24.177 kb on - strand, within GFF1404at 24.177 kb on - strand, within GFF1404at 24.311 kb on + strandat 24.311 kb on + strandat 24.312 kb on - strandat 24.312 kb on - strandat 24.312 kb on - strandat 24.461 kb on - strand, within GFF1405

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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22,078 - -0.3
22,078 - -0.8
22,078 - -0.5
22,190 + +0.6
22,190 + -0.2
22,240 + -1.3
22,240 + -2.6
22,304 + GFF1402 0.22 -0.2
22,304 + GFF1402 0.22 +0.3
22,304 + GFF1402 0.22 -1.0
22,304 + GFF1402 0.22 +1.8
22,304 + GFF1402 0.22 -0.5
22,305 - GFF1402 0.22 -0.5
22,305 - GFF1402 0.22 -1.0
22,305 - GFF1402 0.22 -1.8
22,305 - GFF1402 0.22 +0.9
22,305 - GFF1402 0.22 +0.5
22,414 + GFF1402 0.43 -1.5
22,414 + GFF1402 0.43 -0.9
22,414 + GFF1402 0.43 -0.4
22,414 + GFF1402 0.43 +0.4
22,414 + GFF1402 0.43 -0.1
22,414 + GFF1402 0.43 +0.4
22,414 + GFF1402 0.43 +0.4
22,414 + GFF1402 0.43 -0.4
22,415 - GFF1402 0.44 +0.2
22,415 - GFF1402 0.44 -1.1
22,415 - GFF1402 0.44 -1.0
22,415 - GFF1402 0.44 +0.6
22,503 - GFF1402 0.61 -0.5
22,581 - GFF1402 0.76 +0.5
22,741 + +1.2
22,742 - -0.1
22,757 - +1.2
22,793 - -0.1
23,286 + GFF1403 0.55 +0.4
23,286 + GFF1403 0.55 -0.8
23,286 + GFF1403 0.55 +0.2
23,286 + GFF1403 0.55 -1.0
23,286 + GFF1403 0.55 +0.1
23,287 - GFF1403 0.55 -0.8
23,287 - GFF1403 0.55 -0.7
23,287 - GFF1403 0.55 -0.1
23,287 - GFF1403 0.55 -1.4
23,287 - GFF1403 0.55 -0.6
23,287 - GFF1403 0.55 -0.9
23,394 + GFF1403 0.71 -0.3
23,394 + GFF1403 0.71 -0.0
23,395 - GFF1403 0.71 -0.5
23,395 - GFF1403 0.71 -0.3
23,413 - GFF1403 0.74 +0.1
23,451 - GFF1403 0.79 +0.3
23,602 + -0.9
23,603 - +0.6
23,603 - -0.4
23,665 - +1.6
23,746 + -1.1
23,746 + +1.1
23,749 - +0.2
24,176 + GFF1404 0.73 -0.9
24,176 + GFF1404 0.73 +0.7
24,176 + GFF1404 0.73 -1.8
24,177 - GFF1404 0.74 -1.3
24,177 - GFF1404 0.74 -1.1
24,177 - GFF1404 0.74 +0.8
24,311 + +0.6
24,311 + +0.3
24,312 - -0.3
24,312 - -1.6
24,312 - -0.2
24,461 - GFF1405 0.32 +0.8

Or see this region's nucleotide sequence