Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1385 and GFF1386 are separated by 81 nucleotides GFF1386 and GFF1387 are separated by 10 nucleotides GFF1387 and GFF1388 are separated by 27 nucleotides GFF1388 and GFF1389 are separated by 9 nucleotides
GFF1385 - Phenylacetate-coenzyme A ligase, at 5,045 to 6,376
GFF1385
GFF1386 - hypothetical protein, at 6,458 to 7,213
GFF1386
GFF1387 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 7,224 to 8,300
GFF1387
GFF1388 - Putative 1,2-phenylacetyl-CoA epoxidase, subunit D, at 8,328 to 8,852
GFF1388
GFF1389 - 1,2-phenylacetyl-CoA epoxidase, subunit C, at 8,862 to 9,638
GFF1389
Position (kb) 7
8
9 Strain fitness (log2 ratio) -2
-1
0
1
2 at 6.385 kb on + strand at 6.386 kb on - strand at 6.386 kb on - strand at 6.565 kb on - strand, within GFF1386 at 6.565 kb on - strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.748 kb on - strand, within GFF1386 at 6.748 kb on - strand, within GFF1386 at 7.185 kb on + strand at 7.186 kb on - strand at 7.186 kb on - strand at 7.186 kb on - strand at 7.234 kb on + strand at 7.234 kb on + strand at 7.235 kb on - strand at 7.285 kb on + strand at 7.285 kb on + strand at 7.286 kb on - strand at 7.286 kb on - strand at 7.304 kb on - strand at 7.393 kb on + strand, within GFF1387 at 7.394 kb on - strand, within GFF1387 at 7.668 kb on - strand, within GFF1387 at 7.798 kb on + strand, within GFF1387 at 7.798 kb on + strand, within GFF1387 at 7.799 kb on - strand, within GFF1387 at 7.861 kb on + strand, within GFF1387 at 7.861 kb on + strand, within GFF1387 at 7.862 kb on - strand, within GFF1387 at 7.957 kb on + strand, within GFF1387 at 7.957 kb on + strand, within GFF1387 at 7.957 kb on + strand, within GFF1387 at 7.958 kb on - strand, within GFF1387 at 8.132 kb on - strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.180 kb on - strand, within GFF1387 at 8.326 kb on - strand at 8.326 kb on - strand at 8.377 kb on + strand at 8.378 kb on - strand at 8.378 kb on - strand at 8.378 kb on - strand at 8.542 kb on + strand, within GFF1388 at 8.695 kb on + strand, within GFF1388 at 8.696 kb on - strand, within GFF1388 at 8.696 kb on - strand, within GFF1388 at 8.917 kb on + strand at 8.918 kb on - strand at 8.965 kb on + strand, within GFF1389 at 8.965 kb on + strand, within GFF1389 at 8.966 kb on - strand, within GFF1389 at 8.966 kb on - strand, within GFF1389 at 8.966 kb on - strand, within GFF1389 at 8.966 kb on - strand, within GFF1389 at 8.966 kb on - strand, within GFF1389 at 9.115 kb on + strand, within GFF1389 at 9.115 kb on + strand, within GFF1389 at 9.115 kb on + strand, within GFF1389 at 9.115 kb on + strand, within GFF1389 at 9.115 kb on + strand, within GFF1389 at 9.116 kb on - strand, within GFF1389 at 9.116 kb on - strand, within GFF1389 at 9.116 kb on - strand, within GFF1389 at 9.116 kb on - strand, within GFF1389 at 9.116 kb on - strand, within GFF1389 at 9.116 kb on - strand, within GFF1389 at 9.116 kb on - strand, within GFF1389 at 9.116 kb on - strand, within GFF1389 at 9.214 kb on + strand, within GFF1389 at 9.215 kb on - strand, within GFF1389
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 6,385 + +0.3 6,386 - -0.2 6,386 - -1.9 6,565 - GFF1386 0.14 -0.7 6,565 - GFF1386 0.14 -0.3 6,747 + GFF1386 0.38 +0.8 6,747 + GFF1386 0.38 +1.0 6,747 + GFF1386 0.38 -0.8 6,747 + GFF1386 0.38 +0.1 6,747 + GFF1386 0.38 -0.1 6,748 - GFF1386 0.38 +1.6 6,748 - GFF1386 0.38 -1.8 7,185 + -1.2 7,186 - -0.9 7,186 - -1.5 7,186 - +1.1 7,234 + +0.2 7,234 + +1.1 7,235 - +0.7 7,285 + -0.0 7,285 + +1.6 7,286 - -0.5 7,286 - -0.5 7,304 - +1.3 7,393 + GFF1387 0.16 +0.4 7,394 - GFF1387 0.16 -1.3 7,668 - GFF1387 0.41 -1.3 7,798 + GFF1387 0.53 +0.6 7,798 + GFF1387 0.53 -0.9 7,799 - GFF1387 0.53 +0.6 7,861 + GFF1387 0.59 -0.5 7,861 + GFF1387 0.59 -0.3 7,862 - GFF1387 0.59 -0.7 7,957 + GFF1387 0.68 -2.1 7,957 + GFF1387 0.68 +1.0 7,957 + GFF1387 0.68 +0.3 7,958 - GFF1387 0.68 -0.6 8,132 - GFF1387 0.84 -0.9 8,179 + GFF1387 0.89 -0.1 8,179 + GFF1387 0.89 +0.2 8,179 + GFF1387 0.89 -0.4 8,179 + GFF1387 0.89 +0.9 8,179 + GFF1387 0.89 +0.4 8,180 - GFF1387 0.89 +0.4 8,326 - -0.2 8,326 - +0.4 8,377 + -0.2 8,378 - +0.3 8,378 - +0.9 8,378 - +0.2 8,542 + GFF1388 0.41 -2.3 8,695 + GFF1388 0.70 +1.8 8,696 - GFF1388 0.70 -0.3 8,696 - GFF1388 0.70 -1.4 8,917 + -1.3 8,918 - -0.2 8,965 + GFF1389 0.13 -0.4 8,965 + GFF1389 0.13 +0.4 8,966 - GFF1389 0.13 -0.4 8,966 - GFF1389 0.13 +0.6 8,966 - GFF1389 0.13 +0.2 8,966 - GFF1389 0.13 -0.4 8,966 - GFF1389 0.13 -0.8 9,115 + GFF1389 0.33 +0.1 9,115 + GFF1389 0.33 +0.3 9,115 + GFF1389 0.33 +0.9 9,115 + GFF1389 0.33 -0.9 9,115 + GFF1389 0.33 -0.2 9,116 - GFF1389 0.33 +0.8 9,116 - GFF1389 0.33 -1.4 9,116 - GFF1389 0.33 +0.9 9,116 - GFF1389 0.33 +0.4 9,116 - GFF1389 0.33 -1.3 9,116 - GFF1389 0.33 +1.2 9,116 - GFF1389 0.33 +0.3 9,116 - GFF1389 0.33 +0.9 9,214 + GFF1389 0.45 +1.3 9,215 - GFF1389 0.45 +0.6
Or see this region's nucleotide sequence