Strain Fitness in Xanthobacter sp. DMC5 around GFF1383

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1382 and GFF1383 are separated by 124 nucleotidesGFF1383 and GFF1384 overlap by 4 nucleotidesGFF1384 and GFF1385 are separated by 35 nucleotides GFF1382 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 1,947 to 3,596 GFF1382 GFF1383 - 1,2-epoxyphenylacetyl-CoA isomerase, at 3,721 to 4,521 GFF1383 GFF1384 - Acyl-coenzyme A thioesterase PaaI, at 4,518 to 5,009 GFF1384 GFF1385 - Phenylacetate-coenzyme A ligase, at 5,045 to 6,376 GFF1385 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1at 2.969 kb on - strand, within GFF1382at 2.969 kb on - strand, within GFF1382at 2.969 kb on - strand, within GFF1382at 3.115 kb on + strand, within GFF1382at 3.115 kb on + strand, within GFF1382at 3.116 kb on - strand, within GFF1382at 3.121 kb on + strand, within GFF1382at 3.122 kb on - strand, within GFF1382at 3.355 kb on + strand, within GFF1382at 3.356 kb on - strand, within GFF1382at 3.356 kb on - strand, within GFF1382at 3.493 kb on + strandat 3.494 kb on - strandat 3.735 kb on + strandat 3.988 kb on + strand, within GFF1383at 3.988 kb on + strand, within GFF1383at 3.988 kb on + strand, within GFF1383at 3.988 kb on + strand, within GFF1383at 4.095 kb on - strand, within GFF1383at 4.171 kb on + strand, within GFF1383at 4.171 kb on + strand, within GFF1383at 4.171 kb on + strand, within GFF1383at 4.172 kb on - strand, within GFF1383at 4.172 kb on - strand, within GFF1383at 4.172 kb on - strand, within GFF1383at 4.456 kb on + strandat 4.764 kb on + strand, within GFF1384at 4.764 kb on + strand, within GFF1384at 4.764 kb on + strand, within GFF1384at 4.764 kb on + strand, within GFF1384at 4.765 kb on - strand, within GFF1384at 4.765 kb on - strand, within GFF1384at 4.765 kb on - strand, within GFF1384at 4.803 kb on + strand, within GFF1384at 4.803 kb on + strand, within GFF1384at 4.803 kb on + strand, within GFF1384at 4.804 kb on - strand, within GFF1384at 4.804 kb on - strand, within GFF1384at 4.804 kb on - strand, within GFF1384at 4.804 kb on - strand, within GFF1384at 4.881 kb on + strand, within GFF1384at 4.881 kb on + strand, within GFF1384at 4.881 kb on + strand, within GFF1384at 4.882 kb on - strand, within GFF1384at 4.882 kb on - strand, within GFF1384at 5.171 kb on + strandat 5.172 kb on - strandat 5.172 kb on - strandat 5.295 kb on - strand, within GFF1385at 5.295 kb on - strand, within GFF1385at 5.384 kb on + strand, within GFF1385at 5.384 kb on + strand, within GFF1385at 5.384 kb on + strand, within GFF1385at 5.384 kb on + strand, within GFF1385at 5.386 kb on + strand, within GFF1385at 5.386 kb on + strand, within GFF1385at 5.386 kb on + strand, within GFF1385at 5.387 kb on - strand, within GFF1385at 5.477 kb on + strand, within GFF1385at 5.477 kb on + strand, within GFF1385at 5.478 kb on - strand, within GFF1385at 5.483 kb on + strand, within GFF1385at 5.483 kb on + strand, within GFF1385at 5.483 kb on + strand, within GFF1385at 5.484 kb on - strand, within GFF1385at 5.516 kb on + strand, within GFF1385

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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2,969 - GFF1382 0.62 -1.3
2,969 - GFF1382 0.62 -2.1
2,969 - GFF1382 0.62 +0.2
3,115 + GFF1382 0.71 -1.3
3,115 + GFF1382 0.71 -0.1
3,116 - GFF1382 0.71 +0.5
3,121 + GFF1382 0.71 +0.5
3,122 - GFF1382 0.71 -0.1
3,355 + GFF1382 0.85 -0.5
3,356 - GFF1382 0.85 +0.8
3,356 - GFF1382 0.85 +0.6
3,493 + -1.4
3,494 - -0.9
3,735 + +1.2
3,988 + GFF1383 0.33 +0.6
3,988 + GFF1383 0.33 -1.3
3,988 + GFF1383 0.33 -1.7
3,988 + GFF1383 0.33 +0.6
4,095 - GFF1383 0.47 -1.0
4,171 + GFF1383 0.56 -0.6
4,171 + GFF1383 0.56 -0.7
4,171 + GFF1383 0.56 +0.4
4,172 - GFF1383 0.56 -0.4
4,172 - GFF1383 0.56 +0.0
4,172 - GFF1383 0.56 +1.2
4,456 + -0.5
4,764 + GFF1384 0.50 -0.8
4,764 + GFF1384 0.50 -0.6
4,764 + GFF1384 0.50 -0.2
4,764 + GFF1384 0.50 -0.1
4,765 - GFF1384 0.50 -1.8
4,765 - GFF1384 0.50 -0.2
4,765 - GFF1384 0.50 +0.1
4,803 + GFF1384 0.58 -0.3
4,803 + GFF1384 0.58 +0.3
4,803 + GFF1384 0.58 +0.1
4,804 - GFF1384 0.58 -0.9
4,804 - GFF1384 0.58 -0.5
4,804 - GFF1384 0.58 +1.1
4,804 - GFF1384 0.58 +0.5
4,881 + GFF1384 0.74 -0.1
4,881 + GFF1384 0.74 -0.8
4,881 + GFF1384 0.74 -0.1
4,882 - GFF1384 0.74 -1.9
4,882 - GFF1384 0.74 +1.1
5,171 + -0.4
5,172 - -0.3
5,172 - +0.3
5,295 - GFF1385 0.19 +0.1
5,295 - GFF1385 0.19 -1.3
5,384 + GFF1385 0.25 -1.5
5,384 + GFF1385 0.25 -0.4
5,384 + GFF1385 0.25 +0.6
5,384 + GFF1385 0.25 +1.2
5,386 + GFF1385 0.26 -0.0
5,386 + GFF1385 0.26 -0.0
5,386 + GFF1385 0.26 +0.1
5,387 - GFF1385 0.26 +0.3
5,477 + GFF1385 0.32 -0.2
5,477 + GFF1385 0.32 +0.4
5,478 - GFF1385 0.33 -0.4
5,483 + GFF1385 0.33 +0.0
5,483 + GFF1385 0.33 -0.0
5,483 + GFF1385 0.33 +0.1
5,484 - GFF1385 0.33 +0.5
5,516 + GFF1385 0.35 +0.6

Or see this region's nucleotide sequence