Strain Fitness in Xanthobacter sp. DMC5 around GFF1224

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1222 and GFF1223 are separated by 3 nucleotidesGFF1223 and GFF1224 overlap by 4 nucleotidesGFF1224 and GFF1225 are separated by 1 nucleotidesGFF1225 and GFF1226 overlap by 4 nucleotidesGFF1226 and GFF1227 are separated by 9 nucleotides GFF1222 - Na(+)/H(+) antiporter subunit A, at 1,324,834 to 1,327,683 GFF1222 GFF1223 - Na(+)/H(+) antiporter subunit C, at 1,327,687 to 1,328,037 GFF1223 GFF1224 - Na(+)/H(+) antiporter subunit D, at 1,328,034 to 1,329,575 GFF1224 GFF1225 - Na(+)/H(+) antiporter subunit E1, at 1,329,577 to 1,330,068 GFF1225 GFF1226 - Na(+)/H(+) antiporter subunit F, at 1,330,065 to 1,330,334 GFF1226 GFF1227 - hypothetical protein, at 1,330,344 to 1,330,715 GFF1227 Position (kb) 1328 1329 1330Strain fitness (log2 ratio) -2 -1 0 1 2at 1327.059 kb on + strand, within GFF1222at 1327.105 kb on + strand, within GFF1222at 1327.105 kb on + strand, within GFF1222at 1327.105 kb on + strand, within GFF1222at 1327.105 kb on + strand, within GFF1222at 1327.105 kb on + strand, within GFF1222at 1327.106 kb on - strand, within GFF1222at 1327.106 kb on - strand, within GFF1222at 1327.106 kb on - strand, within GFF1222at 1327.252 kb on + strand, within GFF1222at 1327.252 kb on + strand, within GFF1222at 1327.252 kb on + strand, within GFF1222at 1327.252 kb on + strand, within GFF1222at 1327.252 kb on + strand, within GFF1222at 1327.253 kb on - strand, within GFF1222at 1327.253 kb on - strand, within GFF1222at 1327.253 kb on - strand, within GFF1222at 1327.253 kb on - strand, within GFF1222at 1327.253 kb on - strand, within GFF1222at 1327.253 kb on - strand, within GFF1222at 1327.253 kb on - strand, within GFF1222at 1327.333 kb on + strand, within GFF1222at 1327.333 kb on + strand, within GFF1222at 1327.334 kb on - strand, within GFF1222at 1327.349 kb on - strand, within GFF1222at 1327.391 kb on - strand, within GFF1222at 1327.391 kb on - strand, within GFF1222at 1327.477 kb on + strandat 1327.738 kb on + strand, within GFF1223at 1327.739 kb on - strand, within GFF1223at 1327.739 kb on - strand, within GFF1223at 1327.739 kb on - strand, within GFF1223at 1327.924 kb on + strand, within GFF1223at 1328.191 kb on + strand, within GFF1224at 1328.340 kb on + strand, within GFF1224at 1328.340 kb on + strand, within GFF1224at 1328.340 kb on + strand, within GFF1224at 1328.340 kb on + strand, within GFF1224at 1328.340 kb on + strand, within GFF1224at 1328.535 kb on + strand, within GFF1224at 1328.536 kb on - strand, within GFF1224at 1328.536 kb on - strand, within GFF1224at 1328.593 kb on - strand, within GFF1224at 1328.754 kb on + strand, within GFF1224at 1328.754 kb on + strand, within GFF1224at 1328.755 kb on - strand, within GFF1224at 1328.755 kb on - strand, within GFF1224at 1328.755 kb on - strand, within GFF1224at 1328.832 kb on + strand, within GFF1224at 1328.833 kb on - strand, within GFF1224at 1328.833 kb on - strand, within GFF1224at 1329.048 kb on + strand, within GFF1224at 1329.048 kb on + strand, within GFF1224at 1329.048 kb on + strand, within GFF1224at 1329.048 kb on + strand, within GFF1224at 1329.049 kb on - strand, within GFF1224at 1329.049 kb on - strand, within GFF1224at 1329.049 kb on - strand, within GFF1224at 1329.049 kb on - strand, within GFF1224at 1329.049 kb on - strand, within GFF1224at 1329.051 kb on + strand, within GFF1224at 1329.051 kb on + strand, within GFF1224at 1329.051 kb on + strand, within GFF1224at 1329.052 kb on - strand, within GFF1224at 1329.052 kb on - strand, within GFF1224at 1329.052 kb on - strand, within GFF1224at 1329.052 kb on - strand, within GFF1224at 1329.052 kb on - strand, within GFF1224at 1329.526 kb on - strandat 1329.526 kb on - strandat 1329.766 kb on + strand, within GFF1225at 1329.767 kb on - strand, within GFF1225at 1329.767 kb on - strand, within GFF1225at 1329.767 kb on - strand, within GFF1225at 1329.859 kb on + strand, within GFF1225at 1330.037 kb on - strandat 1330.227 kb on + strand, within GFF1226at 1330.227 kb on + strand, within GFF1226at 1330.227 kb on + strand, within GFF1226at 1330.242 kb on + strand, within GFF1226at 1330.243 kb on - strand, within GFF1226at 1330.332 kb on + strandat 1330.333 kb on - strandat 1330.515 kb on + strand, within GFF1227at 1330.515 kb on + strand, within GFF1227at 1330.515 kb on + strand, within GFF1227

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,327,059 + GFF1222 0.78 +0.2
1,327,105 + GFF1222 0.80 -0.5
1,327,105 + GFF1222 0.80 -2.5
1,327,105 + GFF1222 0.80 +0.5
1,327,105 + GFF1222 0.80 +0.2
1,327,105 + GFF1222 0.80 +0.1
1,327,106 - GFF1222 0.80 +1.1
1,327,106 - GFF1222 0.80 +0.4
1,327,106 - GFF1222 0.80 +0.1
1,327,252 + GFF1222 0.85 -0.9
1,327,252 + GFF1222 0.85 +0.5
1,327,252 + GFF1222 0.85 -0.7
1,327,252 + GFF1222 0.85 -0.4
1,327,252 + GFF1222 0.85 +0.5
1,327,253 - GFF1222 0.85 -1.1
1,327,253 - GFF1222 0.85 +0.9
1,327,253 - GFF1222 0.85 +0.0
1,327,253 - GFF1222 0.85 -0.7
1,327,253 - GFF1222 0.85 -0.0
1,327,253 - GFF1222 0.85 +0.5
1,327,253 - GFF1222 0.85 -0.0
1,327,333 + GFF1222 0.88 +1.1
1,327,333 + GFF1222 0.88 -0.1
1,327,334 - GFF1222 0.88 +0.8
1,327,349 - GFF1222 0.88 +1.6
1,327,391 - GFF1222 0.90 +0.4
1,327,391 - GFF1222 0.90 -0.6
1,327,477 + +0.3
1,327,738 + GFF1223 0.15 +0.5
1,327,739 - GFF1223 0.15 -0.2
1,327,739 - GFF1223 0.15 -0.8
1,327,739 - GFF1223 0.15 +0.5
1,327,924 + GFF1223 0.68 -0.6
1,328,191 + GFF1224 0.10 +0.5
1,328,340 + GFF1224 0.20 +0.0
1,328,340 + GFF1224 0.20 +0.2
1,328,340 + GFF1224 0.20 -0.4
1,328,340 + GFF1224 0.20 +0.8
1,328,340 + GFF1224 0.20 +0.8
1,328,535 + GFF1224 0.32 -0.3
1,328,536 - GFF1224 0.33 -1.7
1,328,536 - GFF1224 0.33 -1.5
1,328,593 - GFF1224 0.36 +0.5
1,328,754 + GFF1224 0.47 -0.9
1,328,754 + GFF1224 0.47 -0.0
1,328,755 - GFF1224 0.47 -1.1
1,328,755 - GFF1224 0.47 +1.2
1,328,755 - GFF1224 0.47 -0.1
1,328,832 + GFF1224 0.52 -1.2
1,328,833 - GFF1224 0.52 +0.2
1,328,833 - GFF1224 0.52 -0.2
1,329,048 + GFF1224 0.66 +0.7
1,329,048 + GFF1224 0.66 +0.8
1,329,048 + GFF1224 0.66 +0.2
1,329,048 + GFF1224 0.66 +0.6
1,329,049 - GFF1224 0.66 -0.3
1,329,049 - GFF1224 0.66 +0.2
1,329,049 - GFF1224 0.66 -0.3
1,329,049 - GFF1224 0.66 +0.3
1,329,049 - GFF1224 0.66 -0.6
1,329,051 + GFF1224 0.66 +0.2
1,329,051 + GFF1224 0.66 -1.8
1,329,051 + GFF1224 0.66 -0.6
1,329,052 - GFF1224 0.66 +0.6
1,329,052 - GFF1224 0.66 +0.4
1,329,052 - GFF1224 0.66 -0.4
1,329,052 - GFF1224 0.66 +0.3
1,329,052 - GFF1224 0.66 +0.3
1,329,526 - +1.5
1,329,526 - +2.1
1,329,766 + GFF1225 0.38 -0.8
1,329,767 - GFF1225 0.39 +0.5
1,329,767 - GFF1225 0.39 +0.8
1,329,767 - GFF1225 0.39 +0.2
1,329,859 + GFF1225 0.57 -0.2
1,330,037 - +0.1
1,330,227 + GFF1226 0.60 +0.4
1,330,227 + GFF1226 0.60 -0.3
1,330,227 + GFF1226 0.60 +1.2
1,330,242 + GFF1226 0.66 -1.5
1,330,243 - GFF1226 0.66 -0.0
1,330,332 + +0.1
1,330,333 - -0.6
1,330,515 + GFF1227 0.46 +0.1
1,330,515 + GFF1227 0.46 -0.4
1,330,515 + GFF1227 0.46 -0.9

Or see this region's nucleotide sequence