Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04169

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04167 and MIT1002_04168 are separated by 237 nucleotidesMIT1002_04168 and MIT1002_04169 are separated by 166 nucleotidesMIT1002_04169 and MIT1002_04170 are separated by 311 nucleotidesMIT1002_04170 and MIT1002_04171 are separated by 19 nucleotides MIT1002_04167: MIT1002_04167 - Antitoxin HipB, at 31,455 to 31,865 _04167 MIT1002_04168: MIT1002_04168 - hypothetical protein, at 32,103 to 32,294 _04168 MIT1002_04169: MIT1002_04169 - hypothetical protein, at 32,461 to 32,601 _04169 MIT1002_04170: MIT1002_04170 - hypothetical protein, at 32,913 to 33,218 _04170 MIT1002_04171: MIT1002_04171 - hypothetical protein, at 33,238 to 33,363 _04171 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 31.465 kb on + strandat 31.974 kb on - strandat 32.072 kb on + strandat 32.080 kb on - strandat 32.091 kb on - strandat 32.110 kb on - strandat 32.139 kb on - strand, within MIT1002_04168at 32.191 kb on - strand, within MIT1002_04168at 32.199 kb on + strand, within MIT1002_04168at 32.209 kb on + strand, within MIT1002_04168at 32.245 kb on + strand, within MIT1002_04168at 32.245 kb on + strand, within MIT1002_04168at 32.253 kb on - strand, within MIT1002_04168at 32.253 kb on - strand, within MIT1002_04168at 32.253 kb on - strand, within MIT1002_04168at 32.263 kb on - strand, within MIT1002_04168at 32.472 kb on - strandat 32.524 kb on + strand, within MIT1002_04169at 32.532 kb on - strand, within MIT1002_04169at 32.532 kb on - strand, within MIT1002_04169at 32.532 kb on - strand, within MIT1002_04169at 32.532 kb on - strand, within MIT1002_04169at 32.585 kb on + strand, within MIT1002_04169at 32.604 kb on + strandat 32.604 kb on + strandat 32.604 kb on + strandat 32.636 kb on - strandat 32.641 kb on + strandat 32.641 kb on + strandat 32.641 kb on + strandat 32.712 kb on + strandat 32.720 kb on - strandat 32.720 kb on - strandat 32.761 kb on + strandat 32.769 kb on - strandat 32.769 kb on - strandat 32.771 kb on + strandat 32.771 kb on + strandat 32.779 kb on - strandat 32.779 kb on - strandat 32.779 kb on - strandat 32.784 kb on + strandat 32.792 kb on - strandat 32.794 kb on + strandat 32.863 kb on + strandat 32.873 kb on + strandat 32.971 kb on - strand, within MIT1002_04170at 32.987 kb on + strand, within MIT1002_04170at 33.033 kb on - strand, within MIT1002_04170at 33.036 kb on - strand, within MIT1002_04170at 33.050 kb on + strand, within MIT1002_04170at 33.051 kb on - strand, within MIT1002_04170at 33.058 kb on - strand, within MIT1002_04170at 33.099 kb on + strand, within MIT1002_04170at 33.127 kb on + strand, within MIT1002_04170at 33.127 kb on + strand, within MIT1002_04170at 33.127 kb on + strand, within MIT1002_04170at 33.127 kb on + strand, within MIT1002_04170at 33.135 kb on - strand, within MIT1002_04170at 33.135 kb on - strand, within MIT1002_04170at 33.135 kb on - strand, within MIT1002_04170at 33.135 kb on - strand, within MIT1002_04170at 33.135 kb on - strand, within MIT1002_04170at 33.179 kb on + strand, within MIT1002_04170at 33.179 kb on + strand, within MIT1002_04170at 33.179 kb on + strand, within MIT1002_04170at 33.179 kb on + strand, within MIT1002_04170at 33.179 kb on + strand, within MIT1002_04170at 33.179 kb on + strand, within MIT1002_04170at 33.179 kb on + strand, within MIT1002_04170at 33.187 kb on - strand, within MIT1002_04170at 33.187 kb on - strand, within MIT1002_04170at 33.187 kb on - strand, within MIT1002_04170at 33.187 kb on - strand, within MIT1002_04170at 33.187 kb on - strand, within MIT1002_04170at 33.187 kb on - strand, within MIT1002_04170at 33.188 kb on - strandat 33.208 kb on + strandat 33.208 kb on + strandat 33.208 kb on - strandat 33.208 kb on - strandat 33.216 kb on - strandat 33.265 kb on - strand, within MIT1002_04171at 33.265 kb on - strand, within MIT1002_04171at 33.329 kb on - strand, within MIT1002_04171at 33.386 kb on + strandat 33.431 kb on - strandat 33.461 kb on + strandat 33.469 kb on - strandat 33.478 kb on + strandat 33.478 kb on - strandat 33.546 kb on - strandat 33.572 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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31,465 + +0.3
31,974 - -1.3
32,072 + -0.5
32,080 - +1.0
32,091 - -2.1
32,110 - +0.6
32,139 - MIT1002_04168 0.19 +0.0
32,191 - MIT1002_04168 0.46 -0.5
32,199 + MIT1002_04168 0.50 -1.7
32,209 + MIT1002_04168 0.55 -0.3
32,245 + MIT1002_04168 0.74 +0.9
32,245 + MIT1002_04168 0.74 +0.6
32,253 - MIT1002_04168 0.78 -0.0
32,253 - MIT1002_04168 0.78 -0.5
32,253 - MIT1002_04168 0.78 +1.1
32,263 - MIT1002_04168 0.83 +0.5
32,472 - -0.1
32,524 + MIT1002_04169 0.45 +1.2
32,532 - MIT1002_04169 0.50 +0.6
32,532 - MIT1002_04169 0.50 +1.8
32,532 - MIT1002_04169 0.50 +0.2
32,532 - MIT1002_04169 0.50 -1.1
32,585 + MIT1002_04169 0.88 +0.1
32,604 + -0.4
32,604 + -0.0
32,604 + -1.2
32,636 - +0.4
32,641 + -1.6
32,641 + -0.3
32,641 + -0.2
32,712 + -0.9
32,720 - +1.4
32,720 - -0.2
32,761 + -0.9
32,769 - -0.7
32,769 - -2.2
32,771 + -0.7
32,771 + -0.9
32,779 - -1.6
32,779 - -0.7
32,779 - -0.4
32,784 + -0.9
32,792 - +1.7
32,794 + -1.0
32,863 + -0.7
32,873 + -0.8
32,971 - MIT1002_04170 0.19 +0.9
32,987 + MIT1002_04170 0.24 +1.4
33,033 - MIT1002_04170 0.39 +0.0
33,036 - MIT1002_04170 0.40 +1.3
33,050 + MIT1002_04170 0.45 -1.1
33,051 - MIT1002_04170 0.45 -3.2
33,058 - MIT1002_04170 0.47 -0.3
33,099 + MIT1002_04170 0.61 -2.0
33,127 + MIT1002_04170 0.70 -3.4
33,127 + MIT1002_04170 0.70 +0.3
33,127 + MIT1002_04170 0.70 -1.0
33,127 + MIT1002_04170 0.70 -1.2
33,135 - MIT1002_04170 0.73 -0.2
33,135 - MIT1002_04170 0.73 -0.7
33,135 - MIT1002_04170 0.73 +1.1
33,135 - MIT1002_04170 0.73 +0.3
33,135 - MIT1002_04170 0.73 +1.7
33,179 + MIT1002_04170 0.87 -1.8
33,179 + MIT1002_04170 0.87 -1.6
33,179 + MIT1002_04170 0.87 +1.4
33,179 + MIT1002_04170 0.87 -0.4
33,179 + MIT1002_04170 0.87 +0.0
33,179 + MIT1002_04170 0.87 +0.5
33,179 + MIT1002_04170 0.87 +0.2
33,187 - MIT1002_04170 0.90 -0.6
33,187 - MIT1002_04170 0.90 -1.4
33,187 - MIT1002_04170 0.90 +0.1
33,187 - MIT1002_04170 0.90 -0.2
33,187 - MIT1002_04170 0.90 -0.6
33,187 - MIT1002_04170 0.90 -2.0
33,188 - +0.8
33,208 + +0.9
33,208 + -1.0
33,208 - -0.4
33,208 - +1.2
33,216 - -0.6
33,265 - MIT1002_04171 0.21 +0.3
33,265 - MIT1002_04171 0.21 -0.4
33,329 - MIT1002_04171 0.72 +0.3
33,386 + +0.9
33,431 - -0.3
33,461 + -1.0
33,469 - -0.2
33,478 + -0.5
33,478 - -0.0
33,546 - -0.1
33,572 + +2.0

Or see this region's nucleotide sequence