Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04165

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04163 and MIT1002_04164 are separated by 675 nucleotidesMIT1002_04164 and MIT1002_04165 overlap by 4 nucleotidesMIT1002_04165 and MIT1002_04166 are separated by 39 nucleotides MIT1002_04163: MIT1002_04163 - hypothetical protein, at 28,943 to 29,203 _04163 MIT1002_04164: MIT1002_04164 - hypothetical protein, at 29,879 to 30,001 _04164 MIT1002_04165: MIT1002_04165 - hypothetical protein, at 29,998 to 30,129 _04165 MIT1002_04166: MIT1002_04166 - Serine/threonine-protein kinase HipA, at 30,169 to 31,452 _04166 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 29.011 kb on - strand, within MIT1002_04163at 29.096 kb on + strand, within MIT1002_04163at 29.124 kb on + strand, within MIT1002_04163at 29.124 kb on + strand, within MIT1002_04163at 29.124 kb on + strand, within MIT1002_04163at 29.132 kb on - strand, within MIT1002_04163at 29.141 kb on + strand, within MIT1002_04163at 29.271 kb on + strandat 29.327 kb on + strandat 29.582 kb on + strandat 29.590 kb on - strandat 29.595 kb on + strandat 29.603 kb on - strandat 29.603 kb on - strandat 29.782 kb on + strandat 29.790 kb on + strandat 29.790 kb on - strandat 29.799 kb on - strandat 29.876 kb on - strandat 29.899 kb on - strand, within MIT1002_04164at 29.929 kb on + strand, within MIT1002_04164at 29.954 kb on + strand, within MIT1002_04164at 29.962 kb on - strand, within MIT1002_04164at 30.074 kb on - strand, within MIT1002_04165at 30.074 kb on - strand, within MIT1002_04165at 30.097 kb on - strand, within MIT1002_04165at 30.097 kb on - strand, within MIT1002_04165at 30.117 kb on + strandat 30.132 kb on - strandat 30.144 kb on + strandat 30.251 kb on + strandat 30.256 kb on + strandat 30.287 kb on + strandat 30.293 kb on + strandat 30.293 kb on + strandat 30.368 kb on + strand, within MIT1002_04166at 30.495 kb on + strand, within MIT1002_04166at 30.501 kb on + strand, within MIT1002_04166at 30.569 kb on - strand, within MIT1002_04166at 30.571 kb on + strand, within MIT1002_04166at 30.671 kb on + strand, within MIT1002_04166at 30.679 kb on - strand, within MIT1002_04166at 30.696 kb on - strand, within MIT1002_04166at 30.722 kb on - strand, within MIT1002_04166at 30.748 kb on - strand, within MIT1002_04166at 30.857 kb on + strand, within MIT1002_04166at 30.925 kb on + strand, within MIT1002_04166at 30.979 kb on - strand, within MIT1002_04166at 30.993 kb on + strand, within MIT1002_04166at 31.019 kb on + strand, within MIT1002_04166at 31.031 kb on + strand, within MIT1002_04166at 31.039 kb on - strand, within MIT1002_04166at 31.046 kb on + strand, within MIT1002_04166at 31.051 kb on - strand, within MIT1002_04166at 31.054 kb on - strand, within MIT1002_04166

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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29,011 - MIT1002_04163 0.26 +0.6
29,096 + MIT1002_04163 0.59 -1.5
29,124 + MIT1002_04163 0.69 -0.1
29,124 + MIT1002_04163 0.69 +0.7
29,124 + MIT1002_04163 0.69 -0.3
29,132 - MIT1002_04163 0.72 +0.9
29,141 + MIT1002_04163 0.76 +2.0
29,271 + -1.8
29,327 + -1.6
29,582 + +0.1
29,590 - -0.2
29,595 + -0.2
29,603 - +1.7
29,603 - +1.3
29,782 + -0.7
29,790 + -0.4
29,790 - +0.2
29,799 - -0.6
29,876 - +1.8
29,899 - MIT1002_04164 0.16 +0.0
29,929 + MIT1002_04164 0.41 +0.6
29,954 + MIT1002_04164 0.61 -0.9
29,962 - MIT1002_04164 0.67 +0.0
30,074 - MIT1002_04165 0.58 +0.9
30,074 - MIT1002_04165 0.58 +0.0
30,097 - MIT1002_04165 0.75 +1.0
30,097 - MIT1002_04165 0.75 +1.5
30,117 + +0.6
30,132 - -0.1
30,144 + -0.9
30,251 + +0.6
30,256 + -0.0
30,287 + -0.6
30,293 + -0.4
30,293 + -0.4
30,368 + MIT1002_04166 0.15 +0.6
30,495 + MIT1002_04166 0.25 -0.6
30,501 + MIT1002_04166 0.26 -0.8
30,569 - MIT1002_04166 0.31 +1.0
30,571 + MIT1002_04166 0.31 -0.4
30,671 + MIT1002_04166 0.39 +1.3
30,679 - MIT1002_04166 0.40 -0.7
30,696 - MIT1002_04166 0.41 -0.1
30,722 - MIT1002_04166 0.43 +0.5
30,748 - MIT1002_04166 0.45 +1.1
30,857 + MIT1002_04166 0.54 -0.0
30,925 + MIT1002_04166 0.59 -0.5
30,979 - MIT1002_04166 0.63 -0.3
30,993 + MIT1002_04166 0.64 -0.0
31,019 + MIT1002_04166 0.66 -0.7
31,031 + MIT1002_04166 0.67 -0.9
31,039 - MIT1002_04166 0.68 +0.5
31,046 + MIT1002_04166 0.68 -0.1
31,051 - MIT1002_04166 0.69 -3.7
31,054 - MIT1002_04166 0.69 -0.4

Or see this region's nucleotide sequence