Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04158

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04156 and MIT1002_04157 are separated by 366 nucleotidesMIT1002_04157 and MIT1002_04158 overlap by 11 nucleotidesMIT1002_04158 and MIT1002_04159 are separated by 152 nucleotidesMIT1002_04159 and MIT1002_04160 are separated by 198 nucleotides MIT1002_04156: MIT1002_04156 - hopanoid-associated sugar epimerase, at 22,528 to 25,002 _04156 MIT1002_04157: MIT1002_04157 - hypothetical protein, at 25,369 to 25,809 _04157 MIT1002_04158: MIT1002_04158 - putative secretion ATPase, PEP-CTERM locus subfamily, at 25,799 to 26,770 _04158 MIT1002_04159: MIT1002_04159 - hypothetical protein, at 26,923 to 27,270 _04159 MIT1002_04160: MIT1002_04160 - hypothetical protein, at 27,469 to 28,086 _04160 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 24.889 kb on + strandat 24.902 kb on - strandat 24.912 kb on - strandat 25.041 kb on - strandat 25.079 kb on - strandat 25.090 kb on - strandat 25.123 kb on - strandat 25.161 kb on + strandat 25.179 kb on - strandat 25.247 kb on + strandat 25.288 kb on + strandat 25.312 kb on - strandat 25.316 kb on - strandat 25.327 kb on + strandat 25.354 kb on - strandat 25.575 kb on + strand, within MIT1002_04157at 25.577 kb on - strand, within MIT1002_04157at 25.601 kb on + strand, within MIT1002_04157at 25.601 kb on + strand, within MIT1002_04157at 25.609 kb on - strand, within MIT1002_04157at 25.706 kb on - strand, within MIT1002_04157at 25.874 kb on + strandat 25.874 kb on + strandat 25.882 kb on - strandat 25.882 kb on - strandat 25.882 kb on - strandat 25.903 kb on + strand, within MIT1002_04158at 25.941 kb on - strand, within MIT1002_04158at 25.941 kb on - strand, within MIT1002_04158at 25.985 kb on + strand, within MIT1002_04158at 25.993 kb on - strand, within MIT1002_04158at 26.072 kb on - strand, within MIT1002_04158at 26.077 kb on - strand, within MIT1002_04158at 26.093 kb on + strand, within MIT1002_04158at 26.201 kb on + strand, within MIT1002_04158at 26.202 kb on + strand, within MIT1002_04158at 26.227 kb on - strand, within MIT1002_04158at 26.227 kb on - strand, within MIT1002_04158at 26.336 kb on + strand, within MIT1002_04158at 26.349 kb on + strand, within MIT1002_04158at 26.370 kb on - strand, within MIT1002_04158at 26.405 kb on + strand, within MIT1002_04158at 26.450 kb on + strand, within MIT1002_04158at 26.463 kb on - strand, within MIT1002_04158at 26.488 kb on - strand, within MIT1002_04158at 26.498 kb on - strand, within MIT1002_04158at 26.505 kb on - strand, within MIT1002_04158at 26.698 kb on + strandat 26.706 kb on + strandat 26.714 kb on - strandat 26.714 kb on - strandat 26.714 kb on - strandat 26.714 kb on - strandat 26.756 kb on + strandat 26.756 kb on + strandat 26.785 kb on + strandat 26.811 kb on + strandat 26.811 kb on + strandat 26.811 kb on + strandat 26.811 kb on + strandat 26.823 kb on - strandat 26.896 kb on - strandat 26.966 kb on - strand, within MIT1002_04159at 27.005 kb on + strand, within MIT1002_04159at 27.040 kb on + strand, within MIT1002_04159at 27.050 kb on + strand, within MIT1002_04159at 27.058 kb on + strand, within MIT1002_04159at 27.058 kb on - strand, within MIT1002_04159at 27.121 kb on + strand, within MIT1002_04159at 27.187 kb on + strand, within MIT1002_04159at 27.221 kb on + strand, within MIT1002_04159at 27.229 kb on - strand, within MIT1002_04159at 27.277 kb on + strandat 27.387 kb on + strandat 27.395 kb on + strandat 27.395 kb on - strandat 27.424 kb on + strandat 27.427 kb on + strandat 27.432 kb on - strandat 27.466 kb on + strandat 27.523 kb on + strandat 27.538 kb on - strand, within MIT1002_04160at 27.543 kb on - strand, within MIT1002_04160at 27.557 kb on - strand, within MIT1002_04160at 27.651 kb on + strand, within MIT1002_04160at 27.651 kb on + strand, within MIT1002_04160at 27.664 kb on + strand, within MIT1002_04160at 27.693 kb on - strand, within MIT1002_04160at 27.714 kb on - strand, within MIT1002_04160at 27.718 kb on + strand, within MIT1002_04160at 27.726 kb on - strand, within MIT1002_04160at 27.746 kb on + strand, within MIT1002_04160at 27.752 kb on + strand, within MIT1002_04160at 27.754 kb on - strand, within MIT1002_04160at 27.759 kb on - strand, within MIT1002_04160

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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24,889 + +0.5
24,902 - +1.1
24,912 - -2.9
25,041 - -0.4
25,079 - +0.1
25,090 - -1.6
25,123 - -1.3
25,161 + +1.4
25,179 - +0.6
25,247 + +1.4
25,288 + -0.7
25,312 - -0.6
25,316 - +0.3
25,327 + +0.4
25,354 - -0.7
25,575 + MIT1002_04157 0.47 +0.7
25,577 - MIT1002_04157 0.47 -0.9
25,601 + MIT1002_04157 0.53 -0.0
25,601 + MIT1002_04157 0.53 -1.7
25,609 - MIT1002_04157 0.54 -0.6
25,706 - MIT1002_04157 0.76 +1.3
25,874 + -2.0
25,874 + -0.4
25,882 - -0.5
25,882 - -0.5
25,882 - +0.0
25,903 + MIT1002_04158 0.11 +0.3
25,941 - MIT1002_04158 0.15 -0.3
25,941 - MIT1002_04158 0.15 +0.7
25,985 + MIT1002_04158 0.19 -0.3
25,993 - MIT1002_04158 0.20 +0.4
26,072 - MIT1002_04158 0.28 -1.7
26,077 - MIT1002_04158 0.29 +1.6
26,093 + MIT1002_04158 0.30 -0.6
26,201 + MIT1002_04158 0.41 -0.5
26,202 + MIT1002_04158 0.41 +0.4
26,227 - MIT1002_04158 0.44 -1.1
26,227 - MIT1002_04158 0.44 -1.0
26,336 + MIT1002_04158 0.55 -0.2
26,349 + MIT1002_04158 0.57 -3.7
26,370 - MIT1002_04158 0.59 +0.3
26,405 + MIT1002_04158 0.62 +0.4
26,450 + MIT1002_04158 0.67 +0.3
26,463 - MIT1002_04158 0.68 +0.0
26,488 - MIT1002_04158 0.71 -1.8
26,498 - MIT1002_04158 0.72 -1.3
26,505 - MIT1002_04158 0.73 +0.7
26,698 + +1.5
26,706 + +0.2
26,714 - -2.1
26,714 - +0.7
26,714 - -0.3
26,714 - +0.3
26,756 + +1.0
26,756 + -0.7
26,785 + +0.2
26,811 + +0.8
26,811 + -0.6
26,811 + -0.3
26,811 + -1.0
26,823 - -0.1
26,896 - -0.4
26,966 - MIT1002_04159 0.12 -0.1
27,005 + MIT1002_04159 0.24 -0.8
27,040 + MIT1002_04159 0.34 -1.4
27,050 + MIT1002_04159 0.36 -2.1
27,058 + MIT1002_04159 0.39 +1.8
27,058 - MIT1002_04159 0.39 -0.8
27,121 + MIT1002_04159 0.57 -1.2
27,187 + MIT1002_04159 0.76 -0.5
27,221 + MIT1002_04159 0.86 -1.4
27,229 - MIT1002_04159 0.88 -0.0
27,277 + +0.6
27,387 + +1.1
27,395 + +0.2
27,395 - -0.8
27,424 + -0.4
27,427 + -0.7
27,432 - -1.0
27,466 + -0.7
27,523 + +0.2
27,538 - MIT1002_04160 0.11 +0.3
27,543 - MIT1002_04160 0.12 +1.3
27,557 - MIT1002_04160 0.14 -0.3
27,651 + MIT1002_04160 0.29 -0.2
27,651 + MIT1002_04160 0.29 +0.8
27,664 + MIT1002_04160 0.32 -0.9
27,693 - MIT1002_04160 0.36 -0.1
27,714 - MIT1002_04160 0.40 -0.9
27,718 + MIT1002_04160 0.40 -0.5
27,726 - MIT1002_04160 0.42 +1.0
27,746 + MIT1002_04160 0.45 -2.8
27,752 + MIT1002_04160 0.46 -0.3
27,754 - MIT1002_04160 0.46 +1.6
27,759 - MIT1002_04160 0.47 -1.0

Or see this region's nucleotide sequence