Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04122

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
4,621,415	-				-0.5
4,621,541	-				-1.1
4,621,553	+				+1.1
4,621,553	+				-1.4
4,621,553	+				-1.6
4,621,553	+				-2.4
4,621,561	-		MIT1002_04121	0.10	-0.9
4,621,633	+		MIT1002_04121	0.19	+0.8
4,621,638	+		MIT1002_04121	0.19	+1.4
4,621,641	-		MIT1002_04121	0.19	+1.4
4,621,641	-		MIT1002_04121	0.19	-1.5
4,621,681	-		MIT1002_04121	0.24	-2.3
4,621,728	-		MIT1002_04121	0.29	-1.2
4,621,730	+		MIT1002_04121	0.30	-0.2
4,621,730	+		MIT1002_04121	0.30	-0.2
4,621,739	-		MIT1002_04121	0.31	+0.5
4,621,769	-		MIT1002_04121	0.34	+3.2
4,621,769	-		MIT1002_04121	0.34	-1.0
4,621,840	+		MIT1002_04121	0.42	+1.1
4,621,900	-		MIT1002_04121	0.49	-0.8
4,621,939	-		MIT1002_04121	0.53	-1.9
4,621,973	+		MIT1002_04121	0.57	+2.9
4,622,120	+		MIT1002_04121	0.74	-0.6
4,622,120	+		MIT1002_04121	0.74	-1.2
4,622,120	+		MIT1002_04121	0.74	+0.3
4,622,120	+		MIT1002_04121	0.74	+1.3
4,622,128	-		MIT1002_04121	0.75	+1.1
4,622,128	-		MIT1002_04121	0.75	+1.1
4,622,128	-		MIT1002_04121	0.75	-0.2
4,622,128	-		MIT1002_04121	0.75	-0.2
4,622,128	-		MIT1002_04121	0.75	-0.9
4,622,188	+		MIT1002_04121	0.82	+0.1
4,622,211	+		MIT1002_04121	0.84	-1.2
4,622,211	+		MIT1002_04121	0.84	-0.1
4,622,273	-				-2.5
4,622,304	-				-0.5
4,622,304	-				-0.8
4,622,309	+				-0.9
4,622,317	-				-0.5
4,622,317	-				+2.1
4,622,317	-				-1.6
4,622,317	-				-0.3
4,622,362	-				-2.1
4,622,362	-				-0.8
4,622,383	-				+0.1
4,622,401	+				-2.1
4,622,416	+				+0.5
4,622,479	+		MIT1002_04122	0.11	+0.5
4,622,718	+		MIT1002_04122	0.41	-0.7
4,622,718	+		MIT1002_04122	0.41	-1.8
4,622,753	-		MIT1002_04122	0.45	-0.9
4,622,786	-		MIT1002_04122	0.49	+0.1
4,623,089	+		MIT1002_04122	0.87	+0.5
4,623,096	-		MIT1002_04122	0.88	-1.8
4,623,096	-		MIT1002_04122	0.88	-0.9
4,623,207	-				-3.0
4,623,341	-		MIT1002_04123	0.18	+0.1
4,623,390	+		MIT1002_04123	0.26	-0.5
4,623,423	+		MIT1002_04123	0.31	-1.4
4,623,428	+		MIT1002_04123	0.32	-0.3
4,623,428	+		MIT1002_04123	0.32	+0.3
4,623,440	+		MIT1002_04123	0.34	+4.3
4,623,440	+		MIT1002_04123	0.34	+0.6
4,623,441	-		MIT1002_04123	0.34	-2.0
4,623,474	-		MIT1002_04123	0.39	-0.4
4,623,484	-		MIT1002_04123	0.41	+0.6
4,623,494	-		MIT1002_04123	0.42	-0.1
4,623,502	+		MIT1002_04123	0.44	-1.4
4,623,510	-		MIT1002_04123	0.45	-0.2
4,623,510	-		MIT1002_04123	0.45	+1.3
4,623,511	+		MIT1002_04123	0.45	+0.6
4,623,543	-		MIT1002_04123	0.50	+1.3
4,623,611	+		MIT1002_04123	0.61	+1.4
4,623,611	+		MIT1002_04123	0.61	+1.1
4,623,664	-		MIT1002_04123	0.69	-1.2
4,623,755	-		MIT1002_04123	0.83	+1.8
4,623,791	+		MIT1002_04123	0.89	+0.5
4,623,816	+				-0.3
4,623,844	-				+0.1
4,623,898	+				-1.2
4,623,901	-				+1.4
4,623,901	-				-0.3
4,623,901	-				+0.5
4,623,903	+				-0.5
4,623,903	+				-0.5
4,623,910	+				+0.9
4,623,911	-				-1.4
4,623,911	-				+0.4
4,623,918	-				-0.4
4,623,989	-				+1.6
4,623,991	-				-2.1
4,624,052	-				-0.8
4,624,152	+				+1.1
4,624,165	-				-1.0