Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03949

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
4,431,918	-		MIT1002_03947	0.90	+0.9
4,431,952	+				+0.6
4,431,989	+				-0.3
4,431,989	+				-0.7
4,431,995	-				-0.4
4,431,995	-				-0.4
4,431,995	-				+0.2
4,431,995	-				+1.3
4,431,997	-				+0.8
4,431,997	-				-0.5
4,431,997	-				-0.3
4,432,005	-				-1.1
4,432,007	-				+3.3
4,432,017	-				-1.1
4,432,073	+				-0.9
4,432,074	-				+0.1
4,432,154	-				-1.4
4,432,207	-				+0.4
4,432,239	-				-0.6
4,432,275	+				-1.0
4,432,275	+				+1.3
4,432,283	-				-2.7
4,432,340	-				+0.6
4,432,375	+				-1.0
4,432,377	+				-1.7
4,432,395	-				-0.6
4,432,476	+				-0.2
4,432,484	-				-0.7
4,432,521	+				-0.3
4,432,529	-				+0.2
4,432,609	-				-1.4
4,432,622	+				+2.0
4,432,630	-				-0.8
4,432,770	+		MIT1002_03948	0.20	+0.1
4,432,822	+		MIT1002_03948	0.47	-0.6
4,432,822	+		MIT1002_03948	0.47	+0.0
4,432,830	-		MIT1002_03948	0.51	-0.1
4,432,836	-		MIT1002_03948	0.54	-0.7
4,432,856	+		MIT1002_03948	0.65	-0.2
4,432,864	-		MIT1002_03948	0.69	+0.8
4,432,883	+		MIT1002_03948	0.79	+1.0
4,432,890	+		MIT1002_03948	0.82	-0.8
4,432,910	-				+1.3
4,432,927	+				+0.4
4,432,940	+				+0.8
4,432,950	+				+2.4
4,432,950	+				+0.0
4,432,950	+				-0.2
4,432,950	+				-1.6
4,432,950	+				+0.6
4,432,950	+				-0.4
4,432,950	+				-0.3
4,432,950	+				+1.0
4,432,950	+				-1.7
4,432,950	+				-1.5
4,432,950	+				+1.0
4,432,958	-				+1.1
4,432,958	-				-0.9
4,432,958	-				+0.2
4,432,958	-				-1.7
4,432,958	-				-0.6
4,432,958	-				-0.2
4,432,958	-				+1.7
4,432,958	-				+1.0
4,432,958	-				-1.1
4,432,958	-				+1.0
4,432,958	-				+0.9
4,432,958	-				-0.4
4,433,061	+		MIT1002_03949	0.23	+0.7
4,433,066	+		MIT1002_03949	0.24	+0.5
4,433,076	+		MIT1002_03949	0.25	+1.9
4,433,142	+		MIT1002_03949	0.36	+2.3
4,433,142	+		MIT1002_03949	0.36	-1.1
4,433,188	-		MIT1002_03949	0.43	+0.1
4,433,188	-		MIT1002_03949	0.43	+0.6
4,433,269	+		MIT1002_03949	0.56	+0.5
4,433,286	-		MIT1002_03949	0.59	+0.6
4,433,286	-		MIT1002_03949	0.59	-1.2
4,433,286	-		MIT1002_03949	0.59	-0.1
4,433,432	+		MIT1002_03949	0.82	-0.9
4,433,440	-		MIT1002_03949	0.83	-0.4
4,433,440	-		MIT1002_03949	0.83	-0.4
4,433,457	+		MIT1002_03949	0.86	+0.2
4,433,465	+		MIT1002_03949	0.87	+0.7
4,433,465	+		MIT1002_03949	0.87	+1.0
4,433,465	+		MIT1002_03949	0.87	+0.5
4,433,473	-		MIT1002_03949	0.88	-1.1
4,433,563	-				+0.2
4,433,691	+				+1.1
4,433,793	+				+0.6
4,433,836	-		MIT1002_03950	0.23	+0.2
4,433,838	+		MIT1002_03950	0.24	+2.4
4,433,902	+		MIT1002_03950	0.46	+0.2
4,433,902	+		MIT1002_03950	0.46	-0.8
4,433,910	-		MIT1002_03950	0.48	+1.3
4,434,064	+				+0.9
4,434,094	+				-0.6
4,434,107	-				-0.3
4,434,308	+				-0.8
4,434,310	+		MIT1002_03951	0.10	-1.2
4,434,320	+		MIT1002_03951	0.12	+1.4
4,434,431	+		MIT1002_03951	0.29	-2.0
4,434,454	+		MIT1002_03951	0.33	+0.5
4,434,454	-		MIT1002_03951	0.33	+2.6
4,434,462	+		MIT1002_03951	0.34	+0.6
4,434,479	-		MIT1002_03951	0.37	+0.1
4,434,486	-		MIT1002_03951	0.38	-0.4
4,434,494	-		MIT1002_03951	0.39	+1.3