Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03942

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03940 and MIT1002_03941 are separated by 303 nucleotidesMIT1002_03941 and MIT1002_03942 are separated by 14 nucleotidesMIT1002_03942 and MIT1002_03943 are separated by 14 nucleotides MIT1002_03940: MIT1002_03940 - Glycyl-glycine endopeptidase ALE-1 precursor, at 4,424,137 to 4,424,946 _03940 MIT1002_03941: MIT1002_03941 - 3-dehydroquinate dehydratase, at 4,425,250 to 4,425,690 _03941 MIT1002_03942: MIT1002_03942 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 4,425,705 to 4,426,169 _03942 MIT1002_03943: MIT1002_03943 - Biotin carboxylase, at 4,426,184 to 4,427,527 _03943 Position (kb) 4425 4426 4427Strain fitness (log2 ratio) -1 0 1at 4424.736 kb on - strand, within MIT1002_03940at 4424.773 kb on + strand, within MIT1002_03940at 4424.892 kb on + strandat 4424.892 kb on + strandat 4424.892 kb on + strandat 4424.900 kb on - strandat 4424.900 kb on - strandat 4424.900 kb on - strandat 4424.900 kb on - strandat 4424.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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4,424,736 - MIT1002_03940 0.74 -0.5
4,424,773 + MIT1002_03940 0.79 +1.7
4,424,892 + +0.4
4,424,892 + -0.4
4,424,892 + +1.1
4,424,900 - -0.8
4,424,900 - +0.5
4,424,900 - +0.8
4,424,900 - +1.6
4,424,923 + -1.6

Or see this region's nucleotide sequence