Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03929

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
4,404,334	+		MIT1002_03928	0.52	-1.2
4,404,441	+		MIT1002_03928	0.57	-0.5
4,404,449	-		MIT1002_03928	0.58	-0.9
4,404,449	-		MIT1002_03928	0.58	+0.2
4,404,451	+		MIT1002_03928	0.58	+0.6
4,404,478	-		MIT1002_03928	0.59	-0.5
4,404,530	+		MIT1002_03928	0.62	-0.8
4,404,530	+		MIT1002_03928	0.62	+0.3
4,404,533	+		MIT1002_03928	0.62	-0.2
4,404,538	-		MIT1002_03928	0.62	+0.5
4,404,538	-		MIT1002_03928	0.62	+1.1
4,404,538	-		MIT1002_03928	0.62	-0.2
4,404,567	+		MIT1002_03928	0.64	+0.9
4,404,593	-		MIT1002_03928	0.65	+0.0
4,404,662	+		MIT1002_03928	0.68	-0.8
4,404,671	+		MIT1002_03928	0.69	+0.8
4,404,672	+		MIT1002_03928	0.69	-0.3
4,404,696	-		MIT1002_03928	0.70	+1.4
4,404,718	+		MIT1002_03928	0.71	+3.9
4,404,738	-		MIT1002_03928	0.72	-0.2
4,404,823	-		MIT1002_03928	0.77	-0.8
4,404,914	+		MIT1002_03928	0.81	-1.2
4,404,932	+		MIT1002_03928	0.82	+0.6
4,404,954	-		MIT1002_03928	0.83	-1.1
4,404,969	-		MIT1002_03928	0.84	+0.6
4,404,972	+		MIT1002_03928	0.84	+0.6
4,405,048	+		MIT1002_03928	0.88	-0.1
4,405,054	-		MIT1002_03928	0.88	-0.8
4,405,076	-		MIT1002_03928	0.89	-1.0
4,405,116	-				-0.9
4,405,148	+				-2.3
4,405,153	+				+2.2
4,405,156	-				+1.4
4,405,163	+				+0.8
4,405,163	-				+0.7
4,405,196	-				-0.1
4,405,196	-				-0.7
4,405,278	+				-0.6
4,405,309	-				-0.5
4,405,336	+				-0.6
4,405,383	-				-1.7
4,405,390	+		MIT1002_03929	0.11	-1.1
4,405,517	+		MIT1002_03929	0.24	+0.4
4,405,535	-		MIT1002_03929	0.26	+0.6
4,405,580	+		MIT1002_03929	0.31	-0.6
4,405,588	-		MIT1002_03929	0.32	+1.5
4,405,644	-		MIT1002_03929	0.37	-0.3
4,405,766	+		MIT1002_03929	0.50	-0.7
4,405,807	+		MIT1002_03929	0.55	-2.2
4,405,815	-		MIT1002_03929	0.56	+0.5
4,405,815	-		MIT1002_03929	0.56	+0.2
4,405,872	+		MIT1002_03929	0.62	-0.6
4,405,888	-		MIT1002_03929	0.63	-0.3
4,405,898	-		MIT1002_03929	0.64	+1.0
4,405,900	-		MIT1002_03929	0.65	+0.5
4,405,919	-		MIT1002_03929	0.67	+0.1
4,405,932	-		MIT1002_03929	0.68	-2.8
4,405,964	+		MIT1002_03929	0.71	+1.5
4,405,974	-		MIT1002_03929	0.73	+0.5
4,406,049	-		MIT1002_03929	0.80	+0.2
4,406,091	+		MIT1002_03929	0.85	+1.0
4,406,091	+		MIT1002_03929	0.85	+0.2
4,406,137	+		MIT1002_03929	0.90	-0.8
4,406,182	+				-0.4
4,406,190	-				-1.1
4,406,190	-				-0.8
4,406,195	-				-0.4
4,406,195	-				-1.5
4,406,226	-				-0.4
4,406,267	+				+1.0
4,406,285	-				-0.3
4,406,295	+				+0.0
4,406,303	-				+0.6
4,406,319	+				+1.0
4,406,320	+				-0.6
4,406,327	-				+0.0
4,406,343	+				-0.2
4,406,351	-				+0.9
4,406,405	+				-0.3
4,406,415	-				-0.3
4,406,540	-		MIT1002_03930	0.38	+0.3
4,406,664	+		MIT1002_03930	0.69	+0.0
4,406,669	+		MIT1002_03930	0.70	-0.1
4,406,683	+		MIT1002_03930	0.74	+0.2
4,406,698	+		MIT1002_03930	0.77	-1.1
4,406,706	-		MIT1002_03930	0.79	-1.7
4,406,711	-		MIT1002_03930	0.80	+0.4
4,406,722	+		MIT1002_03930	0.83	+0.4
4,406,786	+				-0.1
4,406,786	+				-1.3
4,406,796	+				-1.0
4,406,826	+				+1.6
4,406,826	+				+0.2
4,407,011	+				-0.5
4,407,051	+				-1.1
4,407,059	-				+2.6
4,407,143	+				-0.0
4,407,158	-				-1.2