Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03708

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
4,141,207	-		MIT1002_03707	0.39	+1.8
4,141,209	-		MIT1002_03707	0.39	+1.2
4,141,214	-		MIT1002_03707	0.39	+1.2
4,141,354	+		MIT1002_03707	0.51	+0.4
4,141,417	+		MIT1002_03707	0.56	+0.8
4,141,422	+		MIT1002_03707	0.57	+0.7
4,141,448	-		MIT1002_03707	0.59	-1.5
4,141,450	-		MIT1002_03707	0.59	-1.0
4,141,540	-		MIT1002_03707	0.67	-0.7
4,141,572	+		MIT1002_03707	0.70	-0.4
4,141,572	-		MIT1002_03707	0.70	+1.8
4,141,581	-		MIT1002_03707	0.71	+0.2
4,141,586	-		MIT1002_03707	0.71	+1.0
4,141,602	-		MIT1002_03707	0.72	+1.2
4,141,626	+		MIT1002_03707	0.74	+1.3
4,141,634	-		MIT1002_03707	0.75	-0.0
4,141,726	-		MIT1002_03707	0.83	+0.4
4,141,743	-		MIT1002_03707	0.84	-1.2
4,141,937	-				+0.2
4,141,954	+				+1.1
4,142,109	+				+0.4
4,142,130	-				+1.1
4,142,295	-				+0.1
4,142,399	-		MIT1002_03708	0.12	+2.4
4,142,426	+		MIT1002_03708	0.14	+2.3
4,142,457	+		MIT1002_03708	0.15	+0.6
4,142,457	+		MIT1002_03708	0.15	+1.3
4,142,465	-		MIT1002_03708	0.16	+1.1
4,142,465	-		MIT1002_03708	0.16	+1.3
4,142,593	+		MIT1002_03708	0.23	+1.1
4,142,601	-		MIT1002_03708	0.24	+1.2
4,142,601	-		MIT1002_03708	0.24	+1.3
4,142,601	-		MIT1002_03708	0.24	+1.7
4,142,601	-		MIT1002_03708	0.24	+2.3
4,142,658	+		MIT1002_03708	0.27	+2.1
4,142,734	+		MIT1002_03708	0.32	+1.5
4,142,735	+		MIT1002_03708	0.32	+3.6
4,142,743	-		MIT1002_03708	0.32	+2.4
4,142,743	-		MIT1002_03708	0.32	+1.0
4,142,776	-		MIT1002_03708	0.34	+1.1
4,142,788	+		MIT1002_03708	0.35	+2.1
4,142,803	+		MIT1002_03708	0.36	+2.7
4,142,811	-		MIT1002_03708	0.36	+2.8
4,142,811	-		MIT1002_03708	0.36	+1.1
4,142,811	-		MIT1002_03708	0.36	+1.7
4,142,811	-		MIT1002_03708	0.36	+1.4
4,142,866	+		MIT1002_03708	0.40	+2.5
4,142,882	-		MIT1002_03708	0.40	+0.9
4,142,943	+		MIT1002_03708	0.44	+1.5
4,142,972	-		MIT1002_03708	0.46	+0.1
4,143,086	+		MIT1002_03708	0.53	+1.4
4,143,091	+		MIT1002_03708	0.53	-0.1
4,143,109	-		MIT1002_03708	0.54	+2.3
4,143,270	+		MIT1002_03708	0.63	+4.0
4,143,270	+		MIT1002_03708	0.63	+2.0
4,143,270	+		MIT1002_03708	0.63	+0.8
4,143,322	+		MIT1002_03708	0.66	+1.8
4,143,330	+		MIT1002_03708	0.67	+1.5
4,143,370	-		MIT1002_03708	0.69	+2.3
4,143,430	-		MIT1002_03708	0.73	+2.7
4,143,469	+		MIT1002_03708	0.75	+2.3
4,143,489	-		MIT1002_03708	0.76	-0.3
4,143,524	+		MIT1002_03708	0.78	+0.4
4,143,524	+		MIT1002_03708	0.78	+1.6
4,143,524	+		MIT1002_03708	0.78	+1.8
4,143,524	+		MIT1002_03708	0.78	+0.4
4,143,524	+		MIT1002_03708	0.78	+1.6
4,143,524	+		MIT1002_03708	0.78	+1.7
4,143,524	+		MIT1002_03708	0.78	+0.9
4,143,524	+		MIT1002_03708	0.78	+2.7
4,143,532	-		MIT1002_03708	0.79	+2.0
4,143,558	+		MIT1002_03708	0.80	+1.6
4,143,566	-		MIT1002_03708	0.81	+3.2
4,143,568	+		MIT1002_03708	0.81	+2.3
4,143,623	+		MIT1002_03708	0.84	+1.5
4,143,623	+		MIT1002_03708	0.84	+2.4
4,143,631	-		MIT1002_03708	0.85	+3.4
4,143,655	-		MIT1002_03708	0.86	+2.3
4,143,733	+				+1.7
4,143,793	-				+1.2
4,143,872	-				+2.1
4,143,872	-				+2.1
4,143,881	-				+1.6
4,143,885	+				+1.3
4,143,893	-				+1.8
4,143,918	+				+1.3
4,143,926	-				+1.4
4,143,971	+				+2.2
4,143,974	-				+1.5
4,143,990	-				-0.3
4,143,990	-				+2.8
4,144,037	+				+0.3
4,144,044	+				+1.6
4,144,044	+				+1.8
4,144,078	-				-1.3
4,144,124	+				+0.2
4,144,125	+				+0.5
4,144,127	-				+0.1
4,144,179	-				-2.0
4,144,187	-				-1.2
4,144,230	-				+0.8
4,144,230	-				-0.5
4,144,257	+				-0.8
4,144,340	+				+0.8
4,144,374	+				+1.2
4,144,439	+		MIT1002_03709	0.13	-0.4
4,144,441	+		MIT1002_03709	0.13	-0.0
4,144,458	+		MIT1002_03709	0.14	-1.5
4,144,589	-		MIT1002_03709	0.24	+0.1
4,144,620	+		MIT1002_03709	0.26	-0.8
4,144,667	+		MIT1002_03709	0.29	+0.9
4,144,675	-		MIT1002_03709	0.30	+1.0
4,144,720	-		MIT1002_03709	0.33	-0.7
4,144,720	-		MIT1002_03709	0.33	-1.1
4,144,720	-		MIT1002_03709	0.33	-0.5
4,144,720	-		MIT1002_03709	0.33	-2.0
4,144,722	+		MIT1002_03709	0.33	+0.7
4,144,781	+		MIT1002_03709	0.37	-0.1
4,144,815	-		MIT1002_03709	0.40	+0.6
4,144,817	+		MIT1002_03709	0.40	-0.6
4,144,841	+		MIT1002_03709	0.42	+1.3
4,144,842	-		MIT1002_03709	0.42	+0.7